Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01604 ATGGAAACTACAAGGCGCTGGTTTAGTAAGTTCAGGTCAAAAAGTAAGGAAACTACAAGCAAGGCAAAAGAAGGGTCAAAACCTCCAATAAACGATGAACCACCCTCAACTGTAACCAAACAGAAGGTTGAAGCTGCGAAGCATTACATAGAAAATCATTATAAGAAGCAGATGCAGAGCCTGCAAGAAAGGAAGGAAAGACGTAATATGCTAGAAAAGAAATTGGCTGATGCCGAAGTCTCCGAGGAAGAGCAGAACAATTTACTTAAGTATTTGGAGAAAAAGGAGACAGAAATCATGCGCCTTCAGAGACATAAGATGGGTGCTGATGACTTTGAGCCCCTGACTATGATCGGAAAAGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAACATGTCAAGGCTGAGAGGAACCTTCTTGCAGAAGTTGATAGCACTTGCATCGTAAAACTTTATTGTTCCTTTCAAGATGAAGAGAATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTGATGCGGAAAGATATATTGACTGAAGATGAAGCTAGGTTCTATGTCGGGGAGACTGTTCTAGCCATAGAGTCCATTCATAAGCATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTGGATAAACATGGTCACATGAAATTATCAGATTTTGGATTATGTAAGCCGCTGGACTGCAGTAACCTTCAGGAAAAAGACTTATCTGTTGGTATGAACAGAAGTGGACTCCTTCAAAGTGATGGACGTCCTTCAGCTCCTAAGCGCTCACAACAGGAGCAACTGCAGCACTGGCAGAAAAATCGGAGAATGCTAGCCTATTCTACGGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGTTGAAGAAAGGATATGGCGTGGAATGTGACTGGTGGTCTCTAGGAGCCATAATGTATGAAATGCTTGTTGGGTATCCACCATTTTATTCAGATGAACCAATGGCAACTTGTAGAAAGATAGTAAATTGGCGAACTACTTTGAAATTTCCGGAAGAAGCTAAACTTTCACCAGAGGCAAAGGATCTTATTTGCAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCATGCATGGTTCGAAGGTACTGAGTGGGACAAATTGTACCAAATGAAAGCTGCTTTTATGCCTGAGGTCAATGACGAATTAGATACTCAAAATTTTGAGAAATTCGAAGAGGCAGAAAAGCAAACCGAACCTTCCTCAAAGGCAGGGCCATGGAGAAAGATGCTTCCATCTAAAGATATTAACTTTGTTGGTTACACTTACAAAAATTATGAAATTGTGGATGAAAATGTAATACCTGGAATTGCTGAATTGAGGAAGAAAACAAAACCTAAAAGGCCATCAATTAAGTCCTTATTTGCCGAAGATGAATCATCGAAGGCTTCGTCTAATCAACCTGTTAGAGGGAGCTTCTTAAATCTCTTACCTCCTCAGATGGAAGTTCCAGAGAAAAATGAATCACAATGA 1626 0.4077 METTRRWFSKFRSKSKETTSKAKEGSKPPINDEPPSTVTKQKVEAAKHYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQNNLLKYLEKKETEIMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSTCIVKLYCSFQDEENLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDLSVGMNRSGLLQSDGRPSAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMATCRKIVNWRTTLKFPEEAKLSPEAKDLICRLLCNVEQRLGTKGADEIKAHAWFEGTEWDKLYQMKAAFMPEVNDELDTQNFEKFEEAEKQTEPSSKAGPWRKMLPSKDINFVGYTYKNYEIVDENVIPGIAELRKKTKPKRPSIKSLFAEDESSKASSNQPVRGSFLNLLPPQMEVPEKNESQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01604 541 SMART serkin_6 112 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01604 541 CDD STKc_NDR_like 110 475 - -
Trre1g01604 541 MobiDBLite consensus disorder prediction 508 524 - -
Trre1g01604 541 MobiDBLite consensus disorder prediction 495 541 - -
Trre1g01604 541 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Trre1g01604 541 MobiDBLite consensus disorder prediction 1 28 - -
Trre1g01604 541 ProSiteProfiles Protein kinase domain profile. 112 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01604 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 464 - -
Trre1g01604 541 Gene3D Phosphorylase Kinase; domain 1 102 197 - -
Trre1g01604 541 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Trre1g01604 541 FunFam Non-specific serine/threonine protein kinase 83 195 - -
Trre1g01604 541 FunFam Non-specific serine/threonine protein kinase 196 263 - -
Trre1g01604 541 Pfam Protein kinase domain 114 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01604 541 SUPERFAMILY Protein kinase-like (PK-like) 87 459 IPR011009 -
Trre1g01604 541 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g01604 541 Gene3D Transferase(Phosphotransferase) domain 1 198 428 - -
Trre1g01604 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g01604 541 FunFam Non-specific serine/threonine protein kinase 430 443 - -
Trre1g01604 541 Coils Coil 54 88 - -
Trre1g01604 541 CDD MobB_NDR_LATS-like 46 107 - -
Trre1g01604 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Trre1g01604 541 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre1g01604 541 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01604 Trre-Chr1 12250645 12256020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01604 1 535 AGC Kinase Gene Family AT4G14350 80.847 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre1g01604 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01604 K08790 - gmx:100795087 992.26