Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01601 ATGGATCTTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAAATTGGGAGTGGATCATTTGGAGAGCTTTATTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTAGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTTTATGAGTCCAAACTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTCATATAAAGTGGTCTGGAGTTGAGGGTGACTACAATGTTATGGCTATTGACCTTCTTGGACCAAGTCTAGAAGACTTGTTTAACTATTGCAGTAGAAAATTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTATTAAACAGAGTAGAGTATATGCACTCTCGGGGCTTTCTGCATCGTGATATAAAGCCCGACAACTTTCTAATGGGTTTAGGTCGCAAGGCAAATCAGGTATATATTATTGACTATGGCCTTGCGAAAAAGTATCGCGATCTTCAAACACACAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAAATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCATATCTTAAGAGACTCTTCCGTGACCTATTCATTAGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCGCAAATTGGATCCAGTTCTAGAACACGGCCAAGTGTGAAACCAGTCTTAAACCCTGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAGATTCGTGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGGACATGGACTGCATAAGGATCTTGCCAAGCAGCACAGGTCTTTAGATAATATGCCATCTCCCAAAGATGTGCAACCTGATTCTGACAGGGCACGCAGTTCTACTCGTAACGGCAGTGCTTCAAAAAGGCCTATGATATCAAACAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGGTCTTGAGCAGTAGTCGTCTATCGACTACTCAAAGGGTTCAACCAGGTTTTGAATCCAAATCATCCTTCACCCGTGCCACCGCAGGGACACGAGGTAGTCGCGATGATACACTCAGGAGCTTCGAGCTCCTGTCAATTGGTACTGGTAAAAAGAAATGA 1395 0.4237 MDLVIGGKFKLGRKIGSGSFGELYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPSVKPVLNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSGHGLHKDLAKQHRSLDNMPSPKDVQPDSDRARSSTRNGSASKRPMISNSRPSSSGEPSESRSSRLVLSSSRLSTTQRVQPGFESKSSFTRATAGTRGSRDDTLRSFELLSIGTGKKK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01601 464 FunFam Casein kinase 1-like protein 1 329 - -
Trre1g01601 464 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01601 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre1g01601 464 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01601 464 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre1g01601 464 MobiDBLite consensus disorder prediction 300 328 - -
Trre1g01601 464 PANTHER CASEIN KINASE-RELATED 13 399 - -
Trre1g01601 464 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Trre1g01601 464 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Trre1g01601 464 MobiDBLite consensus disorder prediction 359 377 - -
Trre1g01601 464 MobiDBLite consensus disorder prediction 378 446 - -
Trre1g01601 464 MobiDBLite consensus disorder prediction 359 447 - -
Trre1g01601 464 FunFam Putative Casein kinase I 1 85 - -
Trre1g01601 464 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre1g01601 464 SMART serkin_6 9 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01601 Trre-Chr1 12235771 12242073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01601 8 213 MAP Kinase Kinase Kinase AT3G06030 27.315 1.14e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre1g01601 Pkinase 5.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01601 K08960 - cave:132177205 794.267