Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01588 ATGGGAATTAGAGATTTTCGTTTCAAAGTCAAGGCATTTAGGGTGAAATTTTTATGCTTAGGAAATAGAAGCATAAGAAGAAATCATGTAAGTGCAAGCAAGCCTTCATGGATGATGCCAATATCACATGGTCATCATGTGGTGGAGCATGATATGATTAAAGATGATTCTGATGACTCTGAGTTTGATTCAGTTGTGATACAAAGAGAGCAAATTGGTGAAACTGAATTGTGGTATTTTGGAATCTTTGATGCTTTGATTGGAGATTGTGTTACCAAATATTTGCAATCCAATTATTTTGAAAAGAATCTCAAAGAGTCTCAATTGAGGAGAAAAGCCAAAGAAACACTCAAGAGAGCATACCTAGGTGCAAAAACAAAGGTGAGAGAGGCAAACAAATCAGAGGAAACATGCATAATAGGTTCAACTTCAGTGCTAATTATAAATGGAGAAAAACTTGTGCTAGCCAACATTGGAGATTACAGAACTGTTTTGTGTAAAGACGGTGTAGCTTATCAGACTAATGGAAGATACAATCAATCATCCAAAAAACGTTGGTATCGCAGACTTTTTTCAGGTGAATCAGGTAATGCAAAAAGCACAAAGTATTCCAAAGCTTTAGAACTTGTGGTTGGAGGTTATTGGATTGACTCTAGTACTGAATTTGTGATCTTGGCAAGCAATGGCATATGGGAGGTGATGAAGAACCAAGAGGCAGTAAATCTTATCAGACACATAGAGGATCCACAAGAAGCAGCTGAGTGTTTGGCTAAGGAAGCATTGGTTAGGAGGAGCAAAAGCAACATTTCATGTTTAATCATTCGATTTGATTGA 834 0.3693 MGIRDFRFKVKAFRVKFLCLGNRSIRRNHVSASKPSWMMPISHGHHVVEHDMIKDDSDDSEFDSVVIQREQIGETELWYFGIFDALIGDCVTKYLQSNYFEKNLKESQLRRKAKETLKRAYLGAKTKVREANKSEETCIIGSTSVLIINGEKLVLANIGDYRTVLCKDGVAYQTNGRYNQSSKKRWYRRLFSGESGNAKSTKYSKALELVVGGYWIDSSTEFVILASNGIWEVMKNQEAVNLIRHIEDPQEAAECLAKEALVRRSKSNISCLIIRFD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01588 277 Gene3D - 53 277 IPR036457 -
Trre1g01588 277 ProSiteProfiles PPM-type phosphatase domain profile. 59 276 IPR001932 -
Trre1g01588 277 SMART PP2C_4 46 274 IPR001932 -
Trre1g01588 277 SUPERFAMILY PP2C-like 67 277 IPR036457 -
Trre1g01588 277 PANTHER PROTEIN PHOSPHATASE 54 275 IPR015655 GO:0004722|GO:0006470
Trre1g01588 277 CDD PP2Cc 79 276 IPR001932 -
Trre1g01588 277 Pfam Protein phosphatase 2C 216 269 IPR001932 -
Trre1g01588 277 Pfam Protein phosphatase 2C 74 172 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01588 Trre-Chr1 12110035 12113233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01588 1 276 PP2C-type Phosphatase Gene Family AT3G23360 44.964 1.74e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01588 K19704 - gmx:100794054 401.749