Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01585 ATGGCCAATGGCTTTAGTAACATGAGGCAAGATTCGCTAAACTCGGTTGCATGTAGATTCTGCAACCGAGTTTTCATAAGCAGTCAAGCACTCGTAACTCACATCAAGACTCACATGGAGCACGAAAAGGCCGCAATTAGAAGACTTTATCCTACAAAGGATATCAACCCTCAAGCACAATTTCCTTCTCATAATTTCCGACCAAGTTTTCATGTTCCAATTGACACTCAAAACATCAATGGTGATAGGATTTTCCATCCACAACCAAGAAGAAACCAATTTTTCAATGTTGGTTCTATGCAAATGCAACTTCCACCACATGTTTACCAATGGAAGCATCTAGAAGAAGAATCTTCAAATGATGGTACTAAGGCATATATCATGCAACTTGAGAAACCTATCAAGAAGATTGATTTCATTGATTTGGTTAGTAATGATGATGATATGGATGGTGTTCATACATTGGATTTAGCACTTAAGCTCTAG 486 0.3807 MANGFSNMRQDSLNSVACRFCNRVFISSQALVTHIKTHMEHEKAAIRRLYPTKDINPQAQFPSHNFRPSFHVPIDTQNINGDRIFHPQPRRNQFFNVGSMQMQLPPHVYQWKHLEEESSNDGTKAYIMQLEKPIKKIDFIDLVSNDDDMDGVHTLDLALKL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01585 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Trre1g01585 161 SUPERFAMILY beta-beta-alpha zinc fingers 8 44 IPR036236 -
Trre1g01585 161 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01585 Trre-Chr1 12096579 12097064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01585 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01585 - K20210 lja:Lj2g3v1643270.1 121.324