Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01584 ATGGCAGAAACAAAAGAAGGATCAAGTTCTTCTGAGATGTCTCTGAAAGATCAAGGTAACGAATTTTTCAAGTCTGGAAAATATCTCAAAGCTGCTGCACTCTACACTCAAGCAATCAAAAAAGACCCTTCAAATCCCACACTTTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAATAAAGCTCTCGATGATGCTGAAATGACTATTAAGTTAAAACCCCAATGGGAAAAGGGACATTTCCGGAAGGGGTGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTTCCTTTCAGATTGCTTCGCAGTATAACCCACAAAGTCAAGAACTATCGAGAAAGATAAAGAAGATAAACCAACTAGTGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCGAATGTTGACATGGCCAAACATTTAGATACATTGAAACCTGAAATGTCTGAAAAGTATGGATCTGAAGAATCCTGGAAAGACATATTATCATTCCTTATTGAGACCATGGAGACCGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTCCTACCTGATAAGGAAAAGACACAGACCGATAAGTATCCCCCAATTGTGAATATCGATAAGGCCTTCGAAACACCAGAAACACACGGCAGTTGCTTTTCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCTTGCTTAGTGGCTGCCAAAAAGATCATTGCTTATCCACAGGTTTGGAAAGGCCAAGGATCAAGGAAATGGAAACATGCACAGAGTGATGGTTTCTTTGTTCAATTTGAGTCTCCTTCCGTGCGAAAATTGTGGTTTATTCCCAGTTCAAATGAAAAGGGACAGACACTATGCAGGGATCCAGAAGTTTTGGACATTGGTTCTCATGAAGTTGTTCCTCGCTTGTTCAAAGAAAAGACATCCAGTTCTTAA 978 0.4018 MAETKEGSSSSEMSLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQELSRKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDILSFLIETMETAVKSWHETSSVDARVYFLPDKEKTQTDKYPPIVNIDKAFETPETHGSCFSFLRQYAEESFSKAACLVAAKKIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSVRKLWFIPSSNEKGQTLCRDPEVLDIGSHEVVPRLFKEKTSSS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01584 325 Coils Coil 113 133 - -
Trre1g01584 325 Pfam TPR repeat 19 59 - -
Trre1g01584 325 PANTHER TPR REPEAT CONTAINING PROTEIN 9 320 - -
Trre1g01584 325 SUPERFAMILY TPR-like 14 123 IPR011990 GO:0005515
Trre1g01584 325 FunFam serine/threonine-protein phosphatase 5 11 125 - -
Trre1g01584 325 ProSiteProfiles TPR repeat profile. 12 45 IPR019734 GO:0005515
Trre1g01584 325 SMART tpr_5 80 113 IPR019734 GO:0005515
Trre1g01584 325 SMART tpr_5 46 79 IPR019734 GO:0005515
Trre1g01584 325 SMART tpr_5 12 45 IPR019734 GO:0005515
Trre1g01584 325 Gene3D Tetratricopeptide repeat domain 4 164 IPR011990 GO:0005515
Trre1g01584 325 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01584 Trre-Chr1 12088928 12093974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01584 15 106 U-box Gene Family AT3G07370 29.348 6.20e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01584 - - gmx:100790717 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01584 1 12088928 12093974 Trre1g01584 1 12088928 12093974 ECH