Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01583 ATGGGGAAAACAAGCAAATGGCTTAGGAATCTTTTGAAAGGGAAGAAAGACAAAGAAAAAGAGAAAGAAATTTGTGGAAATGGAACAGAAAATCCAACTACTCCAATCTCAACAATACCAAAGGAGAAAAGAAGATGGAGTTTTAGGAGATCATCAGCTTCAAAAGAAGTTAATGTTGCAGAATCAAGTGTCACTTCTTCAATAACAACACAAACTATCAAAGATTCTCAAAATTATCAGAGGAAGCATGTCATGGATGTTGCTGCTGCTGATGGTGTGATCTTCTTGAATTCTGCAGGTTCCAATGGAGGAATTAGAAGGAATGTTGAAGAGGCTTCTGCTATTAAAATTCAATCTGTTTTCAGATCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGAATAGTGAAGCTTCAAGCACTAGTAAGAGGTCACTTAGTGAGAAAACAAGCAACTGAGACACTTAGATGCATGCAGGCTTTGGTCATAGCACAGGCAAGAGCTTGTGCTCAAAGGGCTAGAATGTTGTCAGAAGAAAAGACTAATCAAAAGCAATCAACATACAGACAAACCACAGAAGCCAATTTATTCATGCATATGTACAATGAAATGGAGAGAAGCTTGGAAGAGAGTATAAAGACAGTGGAGATGGATGTTTGTGAATCCAAAGGTAACTCAAGAGGCAGAAACAACACTACAGATCATGAACATCATGAATTGTCTCAACATAGATTTTCTGCATATTACTCACCAAATAGTTCATACTCAAAGAAAGAAAACTACAAGGTATCACCTACGCCGTCAGCACGAACAGATTCAAGTCCAAGAGGATGCAGTGCACATTTTGAGGACTGTTCCTTCAGTACAGCACAGAATAGTCCCTATTACTACTCAGCAGTATCAAGAGTAGATGAATCAAAGCTTCCTTTTGCTTTCACTAAACAATCCTATGAAGAACCCATGTCCAATGACTATCCATTATTTCCAAATTATATGGCTAATACAGAATCATCAAGAGCTAAAGTCAGATCACAGAGTGCACCAAAGCAAAGGCCTGACTCGTATGAGAGGCAACCAAGTCGGCGAAGAGCTTCGGTTGAAGGAAGAAATGTTCCAAGGCCAGTGAAGATGGTGAGGTCATCTTCACATGTTGGTGCAACTGCACAAAACTACCAATATCCATGGTCAATAAAGCTTGATAGATCATCAGTTTCACTCAATGAGAGTGAGGGCTGTGCCTCTGCAAGTACAGTACTAACAAACTCTAACTATTGCAGATCTCTTGTTTCATATAATAATCCTCATGGACCAAGGTACTGA 1323 0.3946 MGKTSKWLRNLLKGKKDKEKEKEICGNGTENPTTPISTIPKEKRRWSFRRSSASKEVNVAESSVTSSITTQTIKDSQNYQRKHVMDVAAADGVIFLNSAGSNGGIRRNVEEASAIKIQSVFRSYLARKALCALRGIVKLQALVRGHLVRKQATETLRCMQALVIAQARACAQRARMLSEEKTNQKQSTYRQTTEANLFMHMYNEMERSLEESIKTVEMDVCESKGNSRGRNNTTDHEHHELSQHRFSAYYSPNSSYSKKENYKVSPTPSARTDSSPRGCSAHFEDCSFSTAQNSPYYYSAVSRVDESKLPFAFTKQSYEEPMSNDYPLFPNYMANTESSRAKVRSQSAPKQRPDSYERQPSRRRASVEGRNVPRPVKMVRSSSHVGATAQNYQYPWSIKLDRSSVSLNESEGCASASTVLTNSNYCRSLVSYNNPHGPRY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01583 440 Gene3D - 108 191 - -
Trre1g01583 440 MobiDBLite consensus disorder prediction 337 384 - -
Trre1g01583 440 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Trre1g01583 440 SMART iq_5 132 153 IPR000048 GO:0005515
Trre1g01583 440 SMART iq_5 109 131 IPR000048 GO:0005515
Trre1g01583 440 MobiDBLite consensus disorder prediction 337 354 - -
Trre1g01583 440 MobiDBLite consensus disorder prediction 10 26 - -
Trre1g01583 440 MobiDBLite consensus disorder prediction 223 278 - -
Trre1g01583 440 PANTHER IQ-DOMAIN 5-RELATED 1 368 - -
Trre1g01583 440 MobiDBLite consensus disorder prediction 246 276 - -
Trre1g01583 440 MobiDBLite consensus disorder prediction 355 370 - -
Trre1g01583 440 MobiDBLite consensus disorder prediction 1 45 - -
Trre1g01583 440 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Trre1g01583 440 MobiDBLite consensus disorder prediction 223 244 - -
Trre1g01583 440 Pfam Protein of unknown function (DUF4005) 315 370 IPR025064 -
Trre1g01583 440 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Trre1g01583 440 Pfam IQ calmodulin-binding motif 134 151 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01583 Trre-Chr1 12085432 12087897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01583 1 429 IQD Protein Family AT4G14750 45.154 1.08e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01583 - - gmx:100817667 548.125