Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01582 ATGCATGTTTTGACAGTGATGGGGAAAACAAGCAAATGGCTTAGGAATCTTTTGAAAGGGAAGAAAGACAAAGAAAAAGAGAAAGAAATTTGTGGAAATGGAACAGAAAATCCAACTACTCCAATCTCAACAATACCAAAGGAGAAAAGAAGATGGAGTTTTAGGAGATCATCAGCTTCAAAAGAAGTTAATGTTGCAGAATCAAGTGTCACTTCTTCAATAACAACACAAACTATCAAAGATTCTCAAAATTATCAGAGGAAGCATGTCATGGATGTTGCTGCTGCTGATGGTGTGATCTTCTTGAATTCTGCAGGTTCCAATGGAGGAATTAGAAGGAATGTTGAAGAGGCTTCTGCTATTAAAATTCAATCTGTTTTCAGATCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGAATAGTGAAGCTTCAAGCACTAGTAAGAGGTCACTTAGTGAGAAAACAAGCAACTGAGACACTTAGATGCATGCAGGCTTTGGTCATAGCACAGGCAAGAGCTTGTGCTCAAAGGGCTAGAATGTTGTCAGAAGAAAAGACTAATCAAAAGCAATCAACATACAGACAAACCACAGAAGCCAATTTATTCATGCATATGTACAATGAAATGGAGAGAAGCTTGGAAGAGAGTATAAAGACAGTGGAGATGGATGTTTGTGAATCCAAAGGTAACTCAAGAGGCAGAAACAACACTACAGATCATGAACATCATGAATTGTCTCAACATAGATTTTCTGCATATTACTCACCAAATAGTTCATACTCAAAGAAAGAAAACTACAAGGTATCACCTACGCCGTCAGCACGAACAGATTCAAGTCCAAGAGGATGCAGTGCACATTTTGAGGACTGTTCCTTCAGTACAGCACAGAATAGTCCCTATTACTACTCAGCAGTATCAAGAGTAGATGAATCAAAGCTTCCTTTTGCTTTCACTAAACAATCCTATGAAGAACCCATGTCCAATGACTATCCATTATTTCCAAATTATATGGCTAATACAGAATCATCAAGAGCTAAAGTCAGATCACAGAGTGCACCAAAGCAAAGGCCTGACTCGTATGAGAGGCAACCAAGTCGGCGAAGAGCTTCGGTTGAAGGAAGAAATGTTCCAAGGCCAGTGAAGATGGTGAGGTCATCTTCACATGTTGGTGCAACTGCACAAAACTACCAATATCCATGGTCAATAAAGCTTGATAGATCATCAGTTTCACTCAATGAGAGTGAGGGCTGTGCCTCTGCAAGTACAGTACTAACAAACTCTAACTATTGCAGATCTCTTGTTTCATATAATAATCCTCATGGACCAAGGTACTGA 1341 0.3945 MHVLTVMGKTSKWLRNLLKGKKDKEKEKEICGNGTENPTTPISTIPKEKRRWSFRRSSASKEVNVAESSVTSSITTQTIKDSQNYQRKHVMDVAAADGVIFLNSAGSNGGIRRNVEEASAIKIQSVFRSYLARKALCALRGIVKLQALVRGHLVRKQATETLRCMQALVIAQARACAQRARMLSEEKTNQKQSTYRQTTEANLFMHMYNEMERSLEESIKTVEMDVCESKGNSRGRNNTTDHEHHELSQHRFSAYYSPNSSYSKKENYKVSPTPSARTDSSPRGCSAHFEDCSFSTAQNSPYYYSAVSRVDESKLPFAFTKQSYEEPMSNDYPLFPNYMANTESSRAKVRSQSAPKQRPDSYERQPSRRRASVEGRNVPRPVKMVRSSSHVGATAQNYQYPWSIKLDRSSVSLNESEGCASASTVLTNSNYCRSLVSYNNPHGPRY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01582 446 MobiDBLite consensus disorder prediction 229 284 - -
Trre1g01582 446 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Trre1g01582 446 Gene3D - 114 207 - -
Trre1g01582 446 MobiDBLite consensus disorder prediction 361 376 - -
Trre1g01582 446 MobiDBLite consensus disorder prediction 252 282 - -
Trre1g01582 446 SMART iq_5 115 137 IPR000048 GO:0005515
Trre1g01582 446 SMART iq_5 138 159 IPR000048 GO:0005515
Trre1g01582 446 MobiDBLite consensus disorder prediction 229 250 - -
Trre1g01582 446 Pfam Protein of unknown function (DUF4005) 321 376 IPR025064 -
Trre1g01582 446 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Trre1g01582 446 MobiDBLite consensus disorder prediction 343 390 - -
Trre1g01582 446 MobiDBLite consensus disorder prediction 343 360 - -
Trre1g01582 446 PANTHER IQ-DOMAIN 5-RELATED 7 374 - -
Trre1g01582 446 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Trre1g01582 446 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01582 Trre-Chr1 12085414 12087897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01582 6 435 IQD Protein Family AT4G14750 45.055 2.67e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01582 - - gmx:100817667 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01582 1 12085414 12087897 Trre1g01582 1 12085414 12087897 ECH