Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01574 ATGCCTTTGAGGCAAATGAAAGAGAGTTCAGAACAACATCTAGTGATAAAACCTCAGTTACAAAACAGTATGAATCATCAAAATCAAGTTAAGAAAGTTACTAAAGCTGTTCAAAATGGTAAAGGTTCATCATTGTTGTTACAAGAGCAACAAAACCAAACTTCACCACCATCACCTCAAGTAAAGAGTGGTGGTGGTGGTGGAAGGAGAAGGAGTAGAAATGGTAGAAAATTTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTAGACCTTGTACTACTATTGTGAAAAATAATGAAAATGGTCTTGTTGAAAATGGAAGTATAATCTCTTCTAGTGATGTAGAGATGAGTACTTTTCCTACTTCAAGTAAGTCTTTGAGTTTTGCTCAAAGACCTGGTTATGGACAAGTTGGTACAAAATGCATTGTTAAAGCCAACCACTTCTTTGCAGAATTACCAGACAAAGACTTGAATCAGTATGATGTAACTATTACACCTGAAGTGTCGTCCAAAGCAGTTAACAGATCCATTATAGCAGAACTTGTGAGGCTGTATAAAGAATCTGACCTTGGCATGAGACTTCCAGCATATGATGGAAGAAAAAGTCTGTACACAGCGGGGGTTCTTCCCTTTTCCTGGAGAGAGTTTAAGATTAAGCTTATAGAGGAAGAGGACGGAATTAACGGCCCCAAAAGGGAAAGAGAATACAAAGTTGTGATCAAGTTTGTTGCAAGGGCTAACTTGCATCACTTGGGGCAGTTTCTAGCTGGAAAGCATGCGGATGCTCCACAGGAGGCAATACAAATTCTTGACATTGTACTAAGAGAGCTAGCATCGAAGAGGTTTTGTCCCATTGGGAGGTCCTTTTATTCACCTGACATTCGAACGCCACAACGGCTTGGAGAAGGATTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATCGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCGGTGGTGGAATTTGTTGGCCAGCTATTGGGAAAAGATGTGCTGTCAAGGCAGTTGTCTGATGCGGATCGCATCAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGACGAAAGTATCGTGTTTCTGGTATAACGTCTCAACCAACAAGAGAACTTGTGTTTCCCGTCGATGAGAACTCGACTATGAAGTCGGTGGTTGAATACTTCCAAGAGATGTACGGTTTCACTATTAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTCGAGGGGCAACGATATACTAAAAGGTTGAATGAAAAGCAAATTACCTCTCTTTTGAAAGTCACGTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTACGGACGGTTCAGCACAACGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAGTCAGCGAGAAGTTAGCTTCGGTGGAAGCACGAATTCTTCCCGCTCCTTGGCTTAAGTATCATGAGAGTGGAAAAGAAAAAAATTGTTTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACCGTTAGCCGCTGGGCATGCATAAATTTTTCACGAGGTGTGCAAGATAGTGTTGCTCGTACTTTTTGCAATGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGGAATTTAATCTGGAGCCTGTTATCCCGATCTACAATGCAAAACCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCGTCGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCAGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAACATGTCTTTAAGATCACTAAACAGTACTTAGCCAATGTCTCTCTGAAGATCAATGTTAAGATGGGTGGTAGAAACACCGTTCTTGTTGATGCGGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCGACAATAATATTTGGAGCAGACGTTACCCACCCTGAAAATGGAGAAGACTCCAGCCCCTCAATAGCAGCTGTGGTAGCGTCACAAGATTGGCCCGAAGTTACAAAGTATGCAGGTTTAGTTTGTGCTCAACCTCAAAGGCAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATTCGAGATTTGTTGGTTTCGTTTAGAAGGGCAACCGGACAGAAGCCACAAAGGATTATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCAATTCGGAAGGCGTGTGCTTCTTTGGAGCCAAACTATCAACCACCAGTAACTTTCATAGTTGTACAAAAACGACATCATACTCGGTTATTTGCAAACAACCACAGGGACAGAAACAGCACCGATAGGAGTGGAAATATCCTACCTGGAACTGTTGTTGATACCAAAATCTGTCACCCAACGGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACAAGTCGTCCAGCGCATTATCATGTTCTATGGGATGAAAATAACTTCACAGCCGACGGAATTCAGTCTTTGACAAACAACCTTTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGCTTCTACACGGAGCCAGACCTACAGGAGACTGGCTCCACCGGCGGCCGTGGTTCGAAAACCACACGTGCAGCCGGTGATTGTGGTGTGAAGCCATTGCCAGCGCTGAAGGAAAATGTGAAGAGAGTTATGTTTTATTGTTAG 2970 0.4226 MPLRQMKESSEQHLVIKPQLQNSMNHQNQVKKVTKAVQNGKGSSLLLQEQQNQTSPPSPQVKSGGGGGRRRSRNGRKFDQVDVLMRPSCRPCTTIVKNNENGLVENGSIISSSDVEMSTFPTSSKSLSFAQRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKHADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01574 989 SMART DUF1785_2 284 336 IPR014811 -
Trre1g01574 989 MobiDBLite consensus disorder prediction 1 79 - -
Trre1g01574 989 Pfam Argonaute linker 2 domain 478 524 IPR032472 -
Trre1g01574 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 119 946 - -
Trre1g01574 989 Pfam N-terminal domain of argonaute 141 275 IPR032474 -
Trre1g01574 989 Gene3D paz domain 330 456 - -
Trre1g01574 989 ProSiteProfiles PAZ domain profile. 337 452 IPR003100 GO:0005515
Trre1g01574 989 SUPERFAMILY PAZ domain 331 492 IPR036085 GO:0005515
Trre1g01574 989 SMART Piwi_a_2 626 947 IPR003165 GO:0003676
Trre1g01574 989 Pfam PAZ domain 360 468 IPR003100 GO:0005515
Trre1g01574 989 Pfam Mid domain of argonaute 535 612 IPR032473 -
Trre1g01574 989 CDD PAZ_argonaute_like 336 451 - -
Trre1g01574 989 ProSiteProfiles Piwi domain profile. 626 947 IPR003165 GO:0003676
Trre1g01574 989 SMART PAZ_2_a_3 341 474 IPR003100 GO:0005515
Trre1g01574 989 FunFam Argonaute 10 516 689 - -
Trre1g01574 989 FunFam Protein argonaute-2 330 457 - -
Trre1g01574 989 MobiDBLite consensus disorder prediction 12 61 - -
Trre1g01574 989 Pfam Argonaute linker 1 domain 285 334 IPR014811 -
Trre1g01574 989 SUPERFAMILY Ribonuclease H-like 618 947 IPR012337 -
Trre1g01574 989 Gene3D - 695 989 IPR036397 GO:0003676
Trre1g01574 989 Gene3D - 516 689 - -
Trre1g01574 989 Pfam Piwi domain 627 945 IPR003165 GO:0003676
Trre1g01574 989 CDD Piwi_ago-like 496 946 IPR045246 -
Trre1g01574 989 FunFam protein argonaute 10-like 695 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01574 Trre-Chr1 11977513 11983565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01574 1 989 Eukaryotic Initiation Factors Gene Family AT5G43810 80.439 0.0 1648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01574 K11593 - gmx:100816999 1761.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01574 1 11977513 11983565 Trre1g01574 1 11977513 11983565 ECH