Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01562 ATGGATTGTAGTGAAAGATCTAACATTACAATTTTGGTTGTGGACCATGATGAAGTGTCTTTGGCATTTGTTGCTAATATACTAATGGAACGGCAATACAAAGTTCAAACTGCCAAAAATGCTCGTGATGCTTTGGTCACTCTTCGAAATAATGGAGGCTTGTTTGACATCATCATTACAGAGTTCCATGTATTAGGAATGAATGGCTTTGATTTTCAAAAGCACATTCAAAATCAATTCCAAGTTCCTGTAATAATGATGTCCAAAGACAATCGGCAACATATAATATCTAAGACATTAGAAAATGGAGCAACACATTTTATTGTGAAACCTGTTTGTGCTGAAGACTTCGACGATATTCAGAAGTATGTTGTTGAAGCAAAGAAACATAAATTATTTATTGATAATTTATTTGCAATAAGTGATGAAGAAGAGTCAAGTGAGCAGCCCAAGACAAAGAAAGAAGATTGCAAGAGAAAGAGTATTGATGAGTCTTCGGGTGGAGAAGAAAAATATCGACTTGTTAAGAAATCGTCGAGGCTTGTTTGGACAAATGAGCTTCATAATTTATTTCTTGATGCAATCAAGAAAGTTGGATTGAAAAAAGCTGTTCCGAATAAAATCCTTGAAATCATGAACATACCCGACTTGACAAGGGAACATGTAGCCAGTCACTTGCAGAAATATCGCTTAAATCTGGACGACAAAGTCGCTGAAAAAGGAACGATTGGAGACATATCACATAGAGTTCTAAGGTCAACCCTTGCATCAAATCTTCCAACTTCAATGATAAGAGAAATTCAAGAAATGAGAACAGAAAAACTCCGTGCACTATATCAAATAGGAGCTGAAAATAATGTTTTTAACATTTTCAACAATTTTCCAAGCAACAAAAATGAATTTCCTTATTTACAAAAACCAAGACTGGAAACTAATGGTTTTGCTAATACTAGTTTTTCATCATATGGATCTAGACAAGGATTGATGGCTGCTTCTTCTTCTGCAAATTTCTTAAAAAGGGATTTTCAATTTGGTGAAACGAGTAACCAAAATCATGGTTCAATTGGAAATGGTTATTTTAATCATATTAACCATGGAGTGAAAAATTGGAACTTGGAATCTATGAACAACTCCAGCATTTTAGCTCAGAATGTTACTTGTGATGCAAGAAATAATAAAAGAGGGTTTGATAGTATTGGTATAAGGGATGATAATGCAAATAGATATAACTTTGGGCTCAATGTTGGGGGTCAAAATGCAAATGTTAATTTTGGATCTTTGGCGTATAAAAACTTTGGTTTGGTTCAAGGAGGTTTAGGTTCTCTTTCTATGAATAAAAGAGGGTTTGATAGTATTGGTATAAGGGATGATAATGCAAATAGCAAGAAATTTGGGCTCAATGTTGGGGATCAAAATGCAAATGCAAATGTGAATTTTGGAACTTTGGGGTATGAAAACTTTGGTTTGGTTCAAGGAGGTTTTGGTTCTCTTTCTTATGTTAGGGGTGGGAGAGGAAGTGAATTTCAAGATGAATTGTTACAAGGAAAAGTGTATGAAAACAGAGAAATTCCTCTACAAAAATCAGATAGAAATATTGTTGAAATTGAGCAAAACCATAGTGGTGGTACTTCCACCAATGTTGTTGAGTCCAACCAAATGGAATTTGACATTTCCAACTTCTCGATGATGCCTGATAAGGATCTTCTTAATAAGGTATGA 1719 0.3444 MDCSERSNITILVVDHDEVSLAFVANILMERQYKVQTAKNARDALVTLRNNGGLFDIIITEFHVLGMNGFDFQKHIQNQFQVPVIMMSKDNRQHIISKTLENGATHFIVKPVCAEDFDDIQKYVVEAKKHKLFIDNLFAISDEEESSEQPKTKKEDCKRKSIDESSGGEEKYRLVKKSSRLVWTNELHNLFLDAIKKVGLKKAVPNKILEIMNIPDLTREHVASHLQKYRLNLDDKVAEKGTIGDISHRVLRSTLASNLPTSMIREIQEMRTEKLRALYQIGAENNVFNIFNNFPSNKNEFPYLQKPRLETNGFANTSFSSYGSRQGLMAASSSANFLKRDFQFGETSNQNHGSIGNGYFNHINHGVKNWNLESMNNSSILAQNVTCDARNNKRGFDSIGIRDDNANRYNFGLNVGGQNANVNFGSLAYKNFGLVQGGLGSLSMNKRGFDSIGIRDDNANSKKFGLNVGDQNANANVNFGTLGYENFGLVQGGFGSLSYVRGGRGSEFQDELLQGKVYENREIPLQKSDRNIVEIEQNHSGGTSTNVVESNQMEFDISNFSMMPDKDLLNKV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01562 572 MobiDBLite consensus disorder prediction 144 164 - -
Trre1g01562 572 FunFam Two-component response regulator 174 236 - -
Trre1g01562 572 CDD REC_typeB_ARR-like 11 125 - -
Trre1g01562 572 SUPERFAMILY Homeodomain-like 176 234 IPR009057 -
Trre1g01562 572 Pfam Response regulator receiver domain 11 116 IPR001789 GO:0000160
Trre1g01562 572 Gene3D - 175 235 - -
Trre1g01562 572 Pfam Myb-like DNA-binding domain 182 230 IPR001005 -
Trre1g01562 572 SUPERFAMILY CheY-like 7 126 IPR011006 -
Trre1g01562 572 Gene3D - 7 134 - -
Trre1g01562 572 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Trre1g01562 572 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 232 IPR006447 GO:0003677
Trre1g01562 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 318 IPR045279 GO:0009736
Trre1g01562 572 SMART REC_2 9 121 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01562 Trre-Chr1 11821679 11826274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01562 9 253 Response Regulator Gene Family AT5G07210 33.798 5.20e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre1g01562 Response_reg 1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01562 - K14491 psat:127115658 419.853