Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01560 ATGGTTGGAATGGAACTCATACCGATAGGTACAATTTTAGCTGTTCTAACCAGCCAGGTTGTGAAAACAGCGAATGCAGCAATTGATGTTCTTGTTGAAAAAGAAAGTTTTAATGTCCTTTCAAAACACCTTCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCACAAGCTGCAAGGGTTGCTCTCGAGTCTCTTGAATCAGATGTTAAAAAAGCAAGTAATTTGGTCGAGAAGTATAGAAACCGCGGCCGTTTTTACTTACTTATGAAGTGTCGATACATAGTCAAGGAGGTTGAACAAGTCATTAGGGATATCGGAAGCTCTCTGGCTGCACTGTCTCTCGCAAATACCGAAGTCCTATCAAGAATTTCTGATCAAGTCAACAGATTACAGAGCGAGATGCAAAGAGCGGAGTTTGAAGCTTCACAGTCTCAGCTTGACATTGTTCATAAGTTAAACCATGGAATTAAGGAGCAAAAATTAGATCAAGCTTTTGCGAACGATATGCTCGAGGAGATAGCGAGGGCAGTTGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGATGGGAAAAAGAAGAAGCTGCTAACAGGAAAGAAAGAGCAGAAGTTATTTTTTTGGAGCAGATTATTTTGCTACTTTCTCAAGCTGACGCTGCAAGGGATTATGAAGAAGTTAAGAAACAATACTTTAAAAGGGTTCAGGTAATAGAGCGATATGGCTCGAGGGAAAGATATATTCCACCGCTTAATTCTTTCCTTTGTTCGATAACCGGAGAAGTTATGGTAGATCCTGTGAGTCTTTGCACTGGTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGAAACTTGACTGATCCCAAAACAGAAGAGGTTCTTGAAGATACTACCTTAAGATCGAATGTTCGATTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTAGAATAAAGTCTATCAGGGAAAACTTATTATCCAATTCTGACTTATTGTTGAAAGAGTCCTTGAGTCAGATGCAGGCTCTTATAAGCGAGAACTCAATTAACAAGGATTGGATTTCTATCGGAGAGCTTACCGATACTATTATCTCTATCCTTGGGAACTCCGATTCCACAGATGTCAAGATGAAGATCTTGATTACTTTGAAGGATGTTGTAGAGGGACATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGGTGGGGTCACATTATTTCTTGCTTACAGAATGGCTCTAGAATTTCAAAGGAAGCAATTGATTTGCTGTATGAGTTACTTCAAGACCGTTCTGGCTGGAATAGAAGTTTCTGCAAAAGGCTTTCCGAGCATTCCAGCGCAATTCTTTACCTTGTTACCATTCTAAAGGAACCTGTCAGTGATTCAACTGGGATTGCAGAAAAGATTTTGATCGAGCTTTTTGAAATAGACGAGGAAAATGTTTCTTGTGCTGCTAAGTTTGGCTGGTACAAAGAGCTTGTTGATCGCATTATTCAAGGATCGGAGTCTTCAAGAATCTCAATGGTTAAAGCCATGATTAATTTGGAATTGGAAGAATCAAACTTGAAACTCCTTGGCGAGCAAGGAGTTATACCTCCTTTGCTAGAAATGTTATCTGGAAGCATTGAATTGAAAGAACTATCATTATCAGCGTTGGTCAAACTAGCAGGAGTTCATGCCAATAAGGGAATTGTTGCTGCATATGGAGGTGTCCCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGACACGAGCGTTCATTACCATTAAATGCTTTGAAATACTTGAGAAGCTTTCATCTGATGATGATGGAATTGATTTCTTCATTGATGGAGAAGGGAAACAACTCGAGTTAGATAACATTATCACCGATTTGCTAGCTCTACAGCAGCTTCCTAACTCAGTTCACTACTTCCGTAAGCCTGCATTGCGCGCTCTTCTTGGCATTTGTAAGTTTGAAACAGGTTTAGTTAAGAAGGCCGTTTTGGCAGCAAATGGTGTATCGCAAATTCTTCCCCTTCTTGATGACTCTGACTCAGAAATTAGGGAAACTGCCATATGTCTTCTTTTTCTTTTCTCTCAACATGAACCAGAAGGAGTTGTCGAATACCTCTTCAGGCCGAGAAGACTCGAAGCTTTAGTCGGATTTCTTGAGAATGATGAAAATAATGATGTACAAGTAGCTGCTTCTGGTTTACTTGCCAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATCAATTTGGGTGGCCTTGATGCAATCATAAACATTTTGAAAAATGGTACGATGGACGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCAACAGATATTGAGTCACAGCGGGATTTGGTTAAACGGGGAATATATCCTTTGCTAGTAAATTTTCTCAATACTGGTTCCGTGACAGCAAAGGCAAGAGCAGCAGCATTCATCGGCGATCTATCGATGAGCACTCCAAAGCTCACAGTTGCCTCAAAATCAACCTTTTCCTGGTGTTTTAGATCATCTCGAGCTTCTTTATGTTCAGCACACGGAAGCATTTGCCATGTGAATTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGCTTGATAAAGCTTTTACAGGAGGAAGTTCATGCAACTGCTTATGAGGCTATACAAACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGAGGAGCTCGTGTCTTACACGAGTCGAATGCAATGAGACCGTTATTGAATATTTTGAATTGGGGAAGTGATTCTCTCAAGGCTGAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGATTACTATGGATCAACGGCTAGATTACGTCTATTTGGTCTTACCGGAATGAATGTATATGGTGATGGCCACCTAAGGAGAAAGGCTGCAAGGGTACTGTCATTGCTTGAACGCTATTCGAGGTCAAGGCCGTCGTCATCTTCAATCACTGCAGTTGTTAGTGAGAATCTACGCCTATAA 3072 0.4066 MVGMELIPIGTILAVLTSQVVKTANAAIDVLVEKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVEKYRNRGRFYLLMKCRYIVKEVEQVIRDIGSSLAALSLANTEVLSRISDQVNRLQSEMQRAEFEASQSQLDIVHKLNHGIKEQKLDQAFANDMLEEIARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADAARDYEEVKKQYFKRVQVIERYGSRERYIPPLNSFLCSITGEVMVDPVSLCTGTTCERSAIEVWFDDGNLTDPKTEEVLEDTTLRSNVRLRESIVEWRELNYCFRIKSIRENLLSNSDLLLKESLSQMQALISENSINKDWISIGELTDTIISILGNSDSTDVKMKILITLKDVVEGHARNKEKVVESQGWGHIISCLQNGSRISKEAIDLLYELLQDRSGWNRSFCKRLSEHSSAILYLVTILKEPVSDSTGIAEKILIELFEIDEENVSCAAKFGWYKELVDRIIQGSESSRISMVKAMINLELEESNLKLLGEQGVIPPLLEMLSGSIELKELSLSALVKLAGVHANKGIVAAYGGVPLVLDLMFSRRTRAFITIKCFEILEKLSSDDDGIDFFIDGEGKQLELDNIITDLLALQQLPNSVHYFRKPALRALLGICKFETGLVKKAVLAANGVSQILPLLDDSDSEIRETAICLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDENNDVQVAASGLLANLPKSERKLTMQLINLGGLDAIINILKNGTMDAKENALSALFRFTDPTDIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVASKSTFSWCFRSSRASLCSAHGSICHVNSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLNILNWGSDSLKAEALGLLEKVFVSKEMVDYYGSTARLRLFGLTGMNVYGDGHLRRKAARVLSLLERYSRSRPSSSSITAVVSENLRL 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01560 1023 Coils Coil 69 89 - -
Trre1g01560 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Trre1g01560 1023 SUPERFAMILY ARM repeat 338 716 IPR016024 -
Trre1g01560 1023 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Trre1g01560 1023 CDD MLKL_NTD 18 142 - -
Trre1g01560 1023 SMART arm_5 673 713 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 715 757 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 408 447 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 758 799 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 919 959 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 802 842 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 537 576 IPR000225 GO:0005515
Trre1g01560 1023 SMART arm_5 875 915 IPR000225 GO:0005515
Trre1g01560 1023 SUPERFAMILY ARM repeat 647 1003 IPR016024 -
Trre1g01560 1023 Gene3D - 537 853 IPR011989 -
Trre1g01560 1023 SUPERFAMILY RING/U-box 247 331 - -
Trre1g01560 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Trre1g01560 1023 Coils Coil 127 154 - -
Trre1g01560 1023 Gene3D - 335 536 IPR011989 -
Trre1g01560 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Trre1g01560 1023 CDD RING-Ubox_PUB 265 314 IPR045210 -
Trre1g01560 1023 Gene3D - 860 998 IPR011989 -
Trre1g01560 1023 Gene3D - 8 123 IPR036537 GO:0007166
Trre1g01560 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01560 Trre-Chr1 11812196 11815807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01560 69 959 U-box Gene Family AT1G68940 22.390 6.83e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01560 - - gmx:100816935 1599.72