Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01556 ATGGAACGGCGGCAACAATCGCCACCGTCTCCACCACCATCACCGCCGTCACGAATCATCCTTGGTAAATACCAACTAACGAAGTTTCTCGGTCGCGGAAACTTCGCAAAAGTATACCAAGCACGTTCACTCATCGACGGTTCAACCGTCGCCGTAAAAGTAATCGACAAATCCAAAACTGTCGATGCATCAATGGAGCCACGAATTGTTCGAGAAATCGACGCTATGCGCCGGCTTCAAAATCATCAAAATATTCTCAAGATCCATGAAGTTTTAGCCACGAAAACTAAGATCTACCTTATCGTTGATTTCGCCGGTGGCGGTGAACTTTTCAATAAACTTTCCCGACGAGGTAGGTTTCCGGAGTCATTAGCTCGTCGCTACTTTCAACAACTCGTATCCGCTCTCTGTTTCTGCCACAAAAACGGCGTCGCACACCGTGATCTCAAACCGCAAAATCTTCTCCTCGACGCCGACGGTAATCTCAAGGTTTCCGATTTCGGTCTCTCGGCTTTACCGGAGCAGCTGAAAAACGGTCTCCTTCATACTGCTTGTGGTACGCCGGCGTACACCGCACCGGAGATTCTCGGTCGGATCGGTTACGACGGATCTAAAGCTGACGCCTGGTCGTGCGGCGTAATTCTCTATGTTCTTCTCGCCGGTCATCTTCCGTTTGATGATTCAAATATTCCGGCGATGTGTAAGAGAATCACTCGCCGGGATTATCAGTTTCCGGCGTGGATTTCGAAACCAGCACGTTACCTGATTTATCAATTACTTGACCCGAATCCGAAAACCCGAATTAGGTTAGAAAACGTAATTGGAAACACTTGGTTTAAGAAATCGTTAAGAGAAGAACCTGAAGAGAAAGTTTTTGAATCTGATTTATACAACAAATACTGTTGTGATAGTAAGAAAGTTGAATTTGGGATGAATGCTTTCGATATAATATCGATGTCTTCGGGTTTAGATTTGAGTGGTTTGTTCGAAACGGCATCGATTAGGAGTGAAAAGAGGTTTACTTCTAGTCAAGAAGTTGGTGTGGTGGAAGAGAAAGTGAAGGAAATTGGAGTGAGATTAGGGTTTAGGGTTGAGATTGGGAAAAATGGTACAATTGGGTTAGGGAAAGGGAAAGTTACTATGGTTGTTGAGGTTTTTAAGATTGTGGATGATTTGTTGTTGGTTGCTCTTAAATTGGAGAATGGTGGATTAGAATTTGAAGATCTTCATTGGAATGATTGGAAGATTGGGCTTCAAGATGTTGTTCTTTCTTGGCATAATCATGAATCCAACTTGAAAATATGTAATGTTAGTGATTTTTGA 1323 0.4346 MERRQQSPPSPPPSPPSRIILGKYQLTKFLGRGNFAKVYQARSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHQNILKIHEVLATKTKIYLIVDFAGGGELFNKLSRRGRFPESLARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILGRIGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCKRITRRDYQFPAWISKPARYLIYQLLDPNPKTRIRLENVIGNTWFKKSLREEPEEKVFESDLYNKYCCDSKKVEFGMNAFDIISMSSGLDLSGLFETASIRSEKRFTSSQEVGVVEEKVKEIGVRLGFRVEIGKNGTIGLGKGKVTMVVEVFKIVDDLLLVALKLENGGLEFEDLHWNDWKIGLQDVVLSWHNHESNLKICNVSDF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01556 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Trre1g01556 440 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Trre1g01556 440 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Trre1g01556 440 Gene3D Kinase associated domain 1, KA1 309 423 - -
Trre1g01556 440 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
Trre1g01556 440 Gene3D Transferase(Phosphotransferase) domain 1 110 303 - -
Trre1g01556 440 Pfam NAF domain 311 365 IPR004041 GO:0007165
Trre1g01556 440 SUPERFAMILY Protein kinase-like (PK-like) 20 291 IPR011009 -
Trre1g01556 440 CDD CIPK_C 312 419 - -
Trre1g01556 440 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01556 440 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01556 440 FunFam Non-specific serine/threonine protein kinase 15 304 - -
Trre1g01556 440 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 368 - -
Trre1g01556 440 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01556 440 FunFam Non-specific serine/threonine protein kinase 17 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01556 Trre-Chr1 11764864 11766186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01556 5 427 Miscellaneous Gene Families AT3G23000 58.372 5.14e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre1g01556 Pkinase 2.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01556 K12761 - gmx:100305372 647.891