Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01550 ATGTTTATACTAAAGAGCAAATTATACAATCAGATGCAGGACTTGAAAGGTATTATTAGAGTGTACTGTAGAGTTTGCCCCTTAATAGGGCAACAAAACAATTGCGGTGTTGTCGGTAGTGTAGAGGAAGAAAATATTTCGCTCATAACGCCTTCTAAGAATGGAAAAGAGTTGAAGAAGACATTTACTTGTAACAAAGTGTTTGGTCCCTATGCAACTCAAGGGGAGGTTTTCTCAGATACGCAACCTCTGATTCGTATAGTTTTGGATGGATTCAATGTTTGTATATTTGCCTACAGCCAGACAGGGTCAGCAAAAACACACACACCACGGTAA 336 0.3899 MFILKSKLYNQMQDLKGIIRVYCRVCPLIGQQNNCGVVGSVEEENISLITPSKNGKELKKTFTCNKVFGPYATQGEVFSDTQPLIRIVLDGFNVCIFAYSQTGSAKTHTPR 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01550 111 PANTHER KINESIN-LIKE PROTEIN KLP-3 5 109 IPR027640 GO:0003777|GO:0007018
Trre1g01550 111 ProSiteProfiles Kinesin motor domain profile. 18 111 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g01550 111 Pfam Microtubule binding 5 109 IPR031852 GO:0008017
Trre1g01550 111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 109 IPR027417 -
Trre1g01550 111 Gene3D Kinesin motor domain 3 110 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01550 Trre-Chr1 11738148 11738765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01550 3 109 Calmodulin-binding Proteins AT5G65930 40.870 4.35e-21 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01550 K10406 - nnu:104598867 149.443