Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01542 ATGATCTCAAAACCAAGTAACATATCTTCACCTTCATCCCCTTTAGTCCCTAATCAACCCCTTTTAATCCCTTTAACTTGTTCTTGCAATTTCATCAACACCACTTTTGGTTCAATCTCTTACTCCAACATCACTTATACTATAAAACCAAATGATACTTTTTTCCTTGTTTCATCTATAAACTATCAAAATCTCACTACTTATCCTTCTGTTGAAGTTGTTAATCCTAATCTTGTTGCTACTAATCTTTCTATTGGTGATAATGTTATTTTCCCAATTTTTTGTAAATGTCCTGATAAAACCAAAACAAATTCAAGTTTCATGATTTCTTATGTTGTTCAACCTTTTGATAATGTTTCATCAATTGCTTCAATGTTTGGAACAACTGAAAAGTCTATAGTTGATGTTAATGGTGAAAAATTGTATACTTATGATACAATTTTTGTTCCTGTTAATAAATTACCTGTCTTGAAACAACCTAGTACTATTGTTCCTTCTCCTCCACCAAGTGGAAATTTTGATGATGGTGATGATGATGATAAGAGTGGAATTGTTAGAGGGTTAGCTATTGGATTGGGAATTTTAGGGTTTTTGTTGATTTTGGTTTTAGGGATTTGGTTTTATAGAGGTGTTTTGGTTAAGAAGGAGAAGAGAGGGAAAGATATGTATTTTGGAGATAAAGGGTATAAAGGGAATAATAATAATAATAATAATAATAATAATGATAATAAGAAGAAACAAACGGATTTGAATTTTATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTTTTTGGATTTGATGAATTAGTTGATGCTACTAATGGGTTTGATGAAAGTTATTTGATTCAAGGGAGTGTTTATAAAGGTGAAATTGATGGACAAGTTTATGCAATTAAGAAGATGAAGTGGAATGCTTATGAAGAGCTCAAAATCTTGCAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTTTGCATAGAACCAGAAGAATCAAATTGTTATCTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGCTACATGAAGAGAAAAACCAAAAGCTGAATTGGATAACAAGGCTAAGAATAGCCATTGACATTGCCAATGGTTTATTATACATTCATGAACACACAAGGCCAAAAGTTGTACATAAAGACATTAAAAGTAGCAACATTCTCTTGGACTCAAATAAGAGAGCTAAAATTGCGAATTTTGGTCTTGCAAAGAGCGGAATCAATGCAATTACAATGCACATTGTTGGAACACAAGGGTACATTTCGCCCGAATATCTAGCCGACGGTATTGTGTCAACAAAGATGGATGTGTTTTCTTTTGGTGTTGTGTTGCTTGAATTGATGTCGGGAAAGGAAGTTATTGATGATGAGGGAAATGTTTTGTGGGCTAATGCTATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCTAGGAGACTTAAGGAATGGTTGGATAAGGTTATTTTAAAGGAGACATGTTCAATGGAAAGTTTAATTGGTGTACTTAATGTTGCAATTGCTTGTTTGCATAGAGATCCTTCAAAGAGGCCTAGCATTATTGATATTGTTTACTCACTTAGTAAATGTGAAGAGAGTGGATTTGAGCTCTCAGATGATGGGTTTAGTTCACAAAATTTGGTGGCTAGGTAA 1686 0.3304 MISKPSNISSPSSPLVPNQPLLIPLTCSCNFINTTFGSISYSNITYTIKPNDTFFLVSSINYQNLTTYPSVEVVNPNLVATNLSIGDNVIFPIFCKCPDKTKTNSSFMISYVVQPFDNVSSIASMFGTTEKSIVDVNGEKLYTYDTIFVPVNKLPVLKQPSTIVPSPPPSGNFDDGDDDDKSGIVRGLAIGLGILGFLLILVLGIWFYRGVLVKKEKRGKDMYFGDKGYKGNNNNNNNNNNDNKKKQTDLNFMANVSDCLDKYRVFGFDELVDATNGFDESYLIQGSVYKGEIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEEKNQKLNWITRLRIAIDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNKRAKIANFGLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELMSGKEVIDDEGNVLWANAIKTFEVKNEQEKARRLKEWLDKVILKETCSMESLIGVLNVAIACLHRDPSKRPSIIDIVYSLSKCEESGFELSDDGFSSQNLVAR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01542 561 Gene3D LysM domain 96 156 IPR036779 -
Trre1g01542 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Trre1g01542 561 Pfam LysM domain 111 149 IPR018392 -
Trre1g01542 561 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 543 - -
Trre1g01542 561 SMART LysM_2 110 150 IPR018392 -
Trre1g01542 561 SMART LysM_2 45 92 IPR018392 -
Trre1g01542 561 MobiDBLite consensus disorder prediction 229 246 - -
Trre1g01542 561 SMART serkin_6 282 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01542 561 FunFam PTI1-like tyrosine-protein kinase 3 344 551 - -
Trre1g01542 561 SUPERFAMILY Protein kinase-like (PK-like) 263 538 IPR011009 -
Trre1g01542 561 MobiDBLite consensus disorder prediction 225 246 - -
Trre1g01542 561 ProSiteProfiles Protein kinase domain profile. 260 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01542 561 Gene3D Phosphorylase Kinase; domain 1 248 343 - -
Trre1g01542 561 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Trre1g01542 561 Gene3D Transferase(Phosphotransferase) domain 1 344 552 - -
Trre1g01542 561 Pfam Protein kinase domain 288 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01542 Trre-Chr1 11671588 11675219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01542 7 540 Receptor kinase-like Gene Family AT2G23770 34.054 1.79e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre1g01542 Pkinase 7.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01542 - - lang:109352405 782.711