Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01541 ATGAAAACTTTCAAATTCCACCACCACTTCTTCACTCTCCTTTTCTTCCTTCTCCTACCCTTCCTTAAATCACAAACTCAAAGACAAGAAAACAACACAGGCTACACTTGCAGCAACAACAACAACAATAACAACAAAAACCAAACAAATATTTATCCATGTCAAACCTATGCATACTACAGAGCAACACTACCAAATTACCTTGATTTAGCTACCATTTCAGACCTTTTTTCATTAAGTCGTTTAATGATCTCAAAACCAAGTAACATATCTTCACCTTCATCCCCTTTAGTCCCTAATCAACCCCTTTTAATCCCTTTAACTTGTTCTTGCAATTTCATCAACACCACTTTTGGTTCAATCTCTTACTCCAACATCACTTATACTATAAAACCAAATGATACTTTTTTCCTTGTTTCATCTATAAACTATCAAAATCTCACTACTTATCCTTCTGTTGAAGTTGTTAATCCTAATCTTGTTGCTACTAATCTTTCTATTGGTGATAATGTTATTTTCCCAATTTTTTGTAAATGTCCTGATAAAACCAAAACAAATTCAAGTTTCATGATTTCTTATGTTGTTCAACCTTTTGATAATGTTTCATCAATTGCTTCAATGTTTGGAACAACTGAAAAGTCTATAGTTGATGTTAATGGTGAAAAATTGTATACTTATGATACAATTTTTGTTCCTGTTAATAAATTACCTGTCTTGAAACAACCTAGTACTATTGTTCCTTCTCCTCCACCAAGTGGAAATTTTGATGATGGTGATGATGATGATAAGAGTGGAATTGTTAGAGGGTTAGCTATTGGATTGGGAATTTTAGGGTTTTTGTTGATTTTGGTTTTAGGGATTTGGTTTTATAGAGGTGTTTTGGTTAAGAAGGAGAAGAGAGGGAAAGATATGTATTTTGGAGATAAAGGGTATAAAGGGAATAATAATAATAATAATAATAATAATAATGATAATAAGAAGAAACAAACGGATTTGAATTTTATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTTTTTGGATTTGATGAATTAGTTGATGCTACTAATGGGTTTGATGAAAGTTATTTGATTCAAGGGAGTGTTTATAAAGGTGAAATTGATGGACAAGTTTATGCAATTAAGAAGATGAAGTGGAATGCTTATGAAGAGCTCAAAATCTTGCAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTTTGCATAGAACCAGAAGAATCAAATTGTTATCTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGCTACATGAAGAGAAAAACCAAAAGCTGAATTGGATAACAAGGCTAAGAATAGCCATTGACATTGCCAATGGTTTATTATACATTCATGAACACACAAGGCCAAAAGTTGTACATAAAGACATTAAAAGTAGCAACATTCTCTTGGACTCAAATAAGAGAGCTAAAATTGCGAATTTTGGTCTTGCAAAGAGCGGAATCAATGCAATTACAATGCACATTGTTGGAACACAAGGGTACATTTCGCCCGAATATCTAGCCGACGGTATTGTGTCAACAAAGATGGATGTGTTTTCTTTTGGTGTTGTGTTGCTTGAATTGATGTCGGGAAAGGAAGTTATTGATGATGAGGGAAATGTTTTGTGGGCTAATGCTATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCTAGGAGACTTAAGGAATGGTTGGATAAGGTTATTTTAAAGGAGACATGTTCAATGGAAAGTTTAATTGGTGTACTTAATGTTGCAATTGCTTGTTTGCATAGAGATCCTTCAAAGAGGCCTAGCATTATTGATATTGTTTACTCACTTAGTAAATGTGAAGAGAGTGGATTTGAGCTCTCAGATGATGGGTTTAGTTCACAAAATTTGGTGGCTAGGTAA 1932 0.3333 MKTFKFHHHFFTLLFFLLLPFLKSQTQRQENNTGYTCSNNNNNNNKNQTNIYPCQTYAYYRATLPNYLDLATISDLFSLSRLMISKPSNISSPSSPLVPNQPLLIPLTCSCNFINTTFGSISYSNITYTIKPNDTFFLVSSINYQNLTTYPSVEVVNPNLVATNLSIGDNVIFPIFCKCPDKTKTNSSFMISYVVQPFDNVSSIASMFGTTEKSIVDVNGEKLYTYDTIFVPVNKLPVLKQPSTIVPSPPPSGNFDDGDDDDKSGIVRGLAIGLGILGFLLILVLGIWFYRGVLVKKEKRGKDMYFGDKGYKGNNNNNNNNNNDNKKKQTDLNFMANVSDCLDKYRVFGFDELVDATNGFDESYLIQGSVYKGEIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEEKNQKLNWITRLRIAIDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNKRAKIANFGLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELMSGKEVIDDEGNVLWANAIKTFEVKNEQEKARRLKEWLDKVILKETCSMESLIGVLNVAIACLHRDPSKRPSIIDIVYSLSKCEESGFELSDDGFSSQNLVAR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01541 643 Pfam Protein kinase domain 370 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01541 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre1g01541 643 SMART serkin_6 364 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01541 643 MobiDBLite consensus disorder prediction 311 328 - -
Trre1g01541 643 Gene3D Phosphorylase Kinase; domain 1 330 425 - -
Trre1g01541 643 MobiDBLite consensus disorder prediction 307 328 - -
Trre1g01541 643 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 12 625 - -
Trre1g01541 643 FunFam PTI1-like tyrosine-protein kinase 3 426 633 - -
Trre1g01541 643 Pfam LysM domain 193 231 IPR018392 -
Trre1g01541 643 Gene3D LysM domain 178 238 IPR036779 -
Trre1g01541 643 SMART LysM_2 192 232 IPR018392 -
Trre1g01541 643 SMART LysM_2 127 174 IPR018392 -
Trre1g01541 643 SUPERFAMILY Protein kinase-like (PK-like) 345 620 IPR011009 -
Trre1g01541 643 Gene3D Transferase(Phosphotransferase) domain 1 426 634 - -
Trre1g01541 643 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01541 Trre-Chr1 11671588 11675465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01541 1 622 Receptor kinase-like Gene Family AT2G23770 33.384 5.67e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre1g01541 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01541 - - lang:109352405 838.565