Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01540 ATGGAATTCAAGGCAACTGAGCTTAGATTGGGATTACCAGGAACAGAGGAAAAGGAGAACAAAATAATGAATCTTAGTGTTAAGAACAACAAAAGACAATTACCTCAAACTTCTGAGGAATCTGTTTCAATTTCTAAGGTTTCAAATGATCAACAAATTGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGAAAAGATAGTTGGGTGGCCACCAATTAGATCTTATAGGAAAAATAGCTTGCAAGAGGCTGAAGTTGGTGGAATCTTTGTGAAAGTTAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTAAGGATCTATGGAGGGTACCCTGAACTACTCAAAGCTCTAGAAACCATGTTCAAGTTAACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGCTACTTCTTGCAAAAGATTAAGAATCATGAAAGGAGCAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 555 0.3964 MEFKATELRLGLPGTEEKENKIMNLSVKNNKRQLPQTSEESVSISKVSNDQQIESSSAAPPAKEKIVGWPPIRSYRKNSLQEAEVGGIFVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFATSCKRLRIMKGAEARGLGCGV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01540 184 SUPERFAMILY CAD & PB1 domains 78 173 - -
Trre1g01540 184 Gene3D - 81 184 - -
Trre1g01540 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 177 IPR003311 GO:0005634|GO:0006355
Trre1g01540 184 FunFam Auxin-responsive protein 82 184 - -
Trre1g01540 184 Pfam AUX/IAA family 30 181 IPR033389 -
Trre1g01540 184 MobiDBLite consensus disorder prediction 26 58 - -
Trre1g01540 184 ProSiteProfiles PB1 domain profile. 87 174 IPR000270 GO:0005515
Trre1g01540 184 MobiDBLite consensus disorder prediction 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01540 Trre-Chr1 11665325 11666891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01540 90 180 B3 DNA Binding Superfamily AT2G46530 37.363 1.28e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre1g01540 AUX_IAA 4.4e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01540 K14484 - gmx:100800212 300.441