Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01536 ATGGATCCCTTTTATCCTGAAAATCTTTTAGGTGAAGTTTTCTTTGATGAACCTCTAGCTTCAAATCAAAGTGATTTTGTAATGACACAACAACCTCTTCCTACACAAAATCCAAGTGCTTTTGTTCATTATAGAGACCAACCCAAGATTAGTTTTTTGGAAGAAAATTCAAATACAATGAACAAGAGAATGGTTGCATTTTTGAGAAAAAGTTTGCCTTTAGAGAGAAATAAAGTAGCTGAATGTGAAAGAGAACGTGGTTTCAAACACATGATTAGTGAAAGAATGAGAAGACAAAGACAAAGACAATGTTGCTCCAATTTACATTCAGTTTTACCTCAAGGAACAAAAACAGATAATAACTCTGTAGTACAAACAGCAGCTAAGGAAATTCAAAGGCTACAAAGATACAAAGATGAATTGGAGAGGAAAAAATTTGTGCTTGAAGAAAATGTTGAAGTAATTGAGGGAAGAAAACATTATTTGAGAGTGCCAAACCATGCTACATCTGGAATTATTAGTTCTATGATTGAGACACTCAAATTGTTGAAAGATCATGGTGTGGAAACTACAAGCATCAAGTCCAATTTTTCTCAACAGGAGTTGTTTGCATCTTTAGAGATTGAAACTGAGATTGCAGAAACTATTGTGGAAAACATTGCAGATGAAATTGAGTGGAAGCTTCACCATAATGTCCCGGAAGGTTCTCATAAGCAAATAATATAA 726 0.3388 MDPFYPENLLGEVFFDEPLASNQSDFVMTQQPLPTQNPSAFVHYRDQPKISFLEENSNTMNKRMVAFLRKSLPLERNKVAECERERGFKHMISERMRRQRQRQCCSNLHSVLPQGTKTDNNSVVQTAAKEIQRLQRYKDELERKKFVLEENVEVIEGRKHYLRVPNHATSGIISSMIETLKLLKDHGVETTSIKSNFSQQELFASLEIETEIAETIVENIADEIEWKLHHNVPEGSHKQII 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01536 241 Coils Coil 124 158 - -
Trre1g01536 241 Gene3D - 84 161 IPR036638 GO:0046983
Trre1g01536 241 SMART finulus 91 140 IPR011598 GO:0046983
Trre1g01536 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 155 IPR036638 GO:0046983
Trre1g01536 241 Pfam Helix-loop-helix DNA-binding domain 90 135 IPR011598 GO:0046983
Trre1g01536 241 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 29 213 IPR044658 -
Trre1g01536 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01536 Trre-Chr1 11624562 11626497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01536 48 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 40.936 9.43e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01536 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01536 - - gmx:100815874 239.965