Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01532 ATGGAAGCAACATCAACTTGCTTCTTCTGTGGTAGAGTCCCATCAAAATCCAAACTTTCATCATCATCTTCATTTGGGTCATTCTGTTTATTAACACGTAACAATGTTAATACAATCATGTGTAGCAAAACATCCTTAAAAACCCATAATCGTGTAGTAATTCAAAACGTCACAAACAGCAACGAAACAAAGGTTCCAAGCAACACAAAAAGAAGAAGAAGGAGAAGAAAAAATGGTGTAGTAACAGAAGAACAACAAATTCAAATACCCTTTGAGAATCTGAACAAGAATGTTTATGTTCATGAGAATACTGGTGACCCAATTGGTTGGAAAGATGTTGGGAAAAGTGTTGTGAATTGGATTCGTGAGAGTATGAAAACTATGGCTTTTGATTTTGCTTCTGCTGAGTTACTTGAAGATTTGATTGAGTTTTCTGAGATGAAACAAAAAATGGGACCTGGTCTTACGTTTGTTATTCAAGCACAACCTTATTTGAATGCTGTTCCTATGCCTCTTGGTCTTGAAGTTATGTGTTTGAAAGCTTGTACTCATTATCCTACTCTTTTTGATCATTTTCAAAGAGAGTTACGTGATGTTCTTCAAGATATGCAGAGTAAAGGTTTGATTGAAGATTGGCGTGAAACTCAGTCTTGGAAGTTGCTCAAGGAACTTGCCAATTCAGCTCAGCATAGGAAAGTTGCAAGGAAAATAACACCGCCAAAGACTGTCCAAGGAGTTTTAGGAATGGACATAGAAAGAGTCAAAGCAATACAGAATAGGATTGATGAATTCACCAGCAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAAGAAGAATTGGATGCGGTTCCTAGACCGGATGATGCTTCTGATACTTCGAAACCGATTGAATTCTTGGTTAGCCATAGCCAACCTCAGCAAGAACTCTGTGACACCATTTGTAATTTGAATGCCATCAGTACCTCTACAGGATTGGGTGGAATGCATTTGGTATTATTCAAGATTGAAGGAAACCACCGATTGCCACCGACTACTCTTTCACCTGGAGAAATGGTTTGTGTGAGAACATGTGATAGCAGGGGTGCAGTTAATACTTCTTGCATGCAAGGAGTTGTGGACAATCTCGGTGATGATGGATATAGTATTACCGTTGCTTTAGAGTCACGCCATGGTGATCCTACTTTCTCTAAACTATTTGGGAAGAATGTGCGCATTGATCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCACTAATGCTGCTTCAGAAGAACGGTTTACGAAAGAAAAATCCGGCTATTTCTGTTGTTGCAACTCTATTCGGAGAGGGAGAAGATGCTGCATGGCTTGAGAAGAATGGTTTGGTCGACTGGGAAGAAGAAAAAGTCGATGGAACATTAGGAAGTGAATCCTTTGACAAATCTCAGCAGAGAGCAATTGCATTGGGTTTGAATAAGAAGAGACCATTATTGGTCATCCAAGGGCCTCCCGGAACTGGCAAGACCGGTTTGCTCAAACAACTAATAGCATTTGCCGTTGAACAAGGTGAAAGGGTTCTTGTTACAGCACCTACCAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGAATAAATATTGTTCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTAGCATCAAAGTCTTTGGCAGAAATTGTAAATGCGAAGATGGCACCTTTTCGCGAAGAGTTTGAGAGGAAGAAGTCTGATCTAAGGAAAGATCTAAGGCATTGTTTAAAGGATGATTCATTGGCTGCAGGCATACGCCAACTTCTGAAAAAGCTGGCAAAGTCGCTAAAGAAACAGGAAAAGCAGATCATAAATGAAGTTTTATCAAGTGCTCGGGTTGTGCTTGCCACCAATACAGGAGCAGCCGATCCTTTAATTCGACAGCTAGATGCTTTTGACTTAGTTGTCATAGATGAAGCCGGACAAGCAATTGAACCGTCTTGCTGGATTCCTATATTGCAGGCGAAACGCTGTATTCTTGCTGGTGATCAATGCCAATTAGCTCCTGTGATATTTTCTCGAAAGGCGTTAGAAGGTGGTTTAGGAATATCGCTATTGGAGAGAGCTGCAACTCTGCATGAAGGGATTCTCACCACAACGTTAACTACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCAAAGGAGATGTATGGAGGATTGCTGAAGTCCTCTAAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAGTGCCCTCTGGTATTACTCGACACTCGAATGCCTTACGGAAGTCTATCACTTGGTTGCGAAGAGCATCTAGATCCGGCAGGAACTGGCTCGTTGTACAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTTTTTTCATTAATTTATGCTGGTGTCAGCCCAAATGCCATTGTAGTTCAGTCCCCTTATGTTGCTCAAGTTCAACTTTTGAGAGACATGCTTGATGGAGTTCCAGAAGCTGCCGGTACCGAAGTTTCCACAATTGATAGTTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCAATGGTACGATCGAACACATTGGGAGCTGTTGGATTCCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCGCGCAAACATTTAGCTGTAGTCTGTGACAGCTCAACTATATGTCACAACACATTCCTAGCAAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCATGTAGAACCAGATAGTTTTGGAGGAGGATTTGGACTTGGGATGAATCCAATGTTACCTTCTATGGATTAG 2880 0.4101 MEATSTCFFCGRVPSKSKLSSSSSFGSFCLLTRNNVNTIMCSKTSLKTHNRVVIQNVTNSNETKVPSNTKRRRRRRKNGVVTEEQQIQIPFENLNKNVYVHENTGDPIGWKDVGKSVVNWIRESMKTMAFDFASAELLEDLIEFSEMKQKMGPGLTFVIQAQPYLNAVPMPLGLEVMCLKACTHYPTLFDHFQRELRDVLQDMQSKGLIEDWRETQSWKLLKELANSAQHRKVARKITPPKTVQGVLGMDIERVKAIQNRIDEFTSNMSELLNIERDVELEFTQEELDAVPRPDDASDTSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSRGAVNTSCMQGVVDNLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPAISVVATLFGEGEDAAWLEKNGLVDWEEEKVDGTLGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIAFAVEQGERVLVTAPTNAAVDNMVEKLSNVGINIVRVGNPARISKTVASKSLAEIVNAKMAPFREEFERKKSDLRKDLRHCLKDDSLAAGIRQLLKKLAKSLKKQEKQIINEVLSSARVVLATNTGAADPLIRQLDAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTTLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLVLLDTRMPYGSLSLGCEEHLDPAGTGSLYNEGEADIVLQHVFSLIYAGVSPNAIVVQSPYVAQVQLLRDMLDGVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSFGGGFGLGMNPMLPSMD 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01532 959 Coils Coil 254 274 - -
Trre1g01532 959 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 151 940 - -
Trre1g01532 959 Pfam AAA domain 484 701 IPR041677 GO:0004386
Trre1g01532 959 Pfam AAA domain 710 913 IPR041679 -
Trre1g01532 959 SMART ultradead3 480 732 IPR014001 -
Trre1g01532 959 CDD DEXXQc_SMUBP2 483 733 - -
Trre1g01532 959 MobiDBLite consensus disorder prediction 59 81 - -
Trre1g01532 959 Coils Coil 585 605 - -
Trre1g01532 959 Gene3D - 312 418 - -
Trre1g01532 959 CDD SF1_C_Upf1 734 930 IPR047187 -
Trre1g01532 959 SMART AAA_5 499 714 IPR003593 GO:0016887
Trre1g01532 959 Coils Coil 609 633 - -
Trre1g01532 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 921 IPR027417 -
Trre1g01532 959 Gene3D - 732 941 IPR027417 -
Trre1g01532 959 FunFam DNA-binding protein SMUBP-2 isoform X2 287 418 - -
Trre1g01532 959 Gene3D - 419 716 IPR027417 -
Trre1g01532 959 FunFam DNA helicase A 732 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01532 Trre-Chr1 11583203 11588232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01532 465 673 Core DNA Replication Machinery Family AT1G08840 24.402 3.09e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01532 - - aip:107625008 1499.18