Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01516 ATGAATGTGAAGAACCTTGTGCTACCAACTGCTGAAGAAGCAGTATCCGTATGGATACATACATTTGGGTTTAGCAGGATGAGACCTGAGCAGCTTGTCAACTATAGAAAGAACTGCCAGCAGATGATTGCATTCAAAGGGACAGTTATGCTTCATAAAACATTACCTCAATGTCGGATAAAATCCGGATACCTAATGGATTGTAGTCCATTAATGCTAAGACCGGAAGCTTGTACTATACGTTCAATTTTCTTAAAAATCGCCGTGTTAACACATCGGGTTGACCTTGACCGAGTGGATGAACCTAAAGAAGATGCAGCTGACCAAATTTCCAGGCCCGGAACTGAGACAATACCACTACCCCGACTTGTGTCAAGTACTTTATATGTTGAAGGGATCCCGTCTGACTGGACAATAAGAAAAGTGGCTGATATTTTTTGCCGTTTTGTGGGATATAGAAAAGTGAGACTTGAGGTGACCAAAGAATCCATGGATCAAGTTGGAGATCCTTCAGTCGTTGGTTTTGTAGATTTTGCAGATCCGTTTTGTGCATCAACTGCCATGAGGATTTTGGAAGATAAATTTGAACTCCATCCTTATTCCAGTTTAAGACTTCGGTTTTCTCCGTCCTAG 633 0.4155 MNVKNLVLPTAEEAVSVWIHTFGFSRMRPEQLVNYRKNCQQMIAFKGTVMLHKTLPQCRIKSGYLMDCSPLMLRPEACTIRSIFLKIAVLTHRVDLDRVDEPKEDAADQISRPGTETIPLPRLVSSTLYVEGIPSDWTIRKVADIFCRFVGYRKVRLEVTKESMDQVGDPSVVGFVDFADPFCASTAMRILEDKFELHPYSSLRLRFSPS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01516 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 210 IPR000504 GO:0003723
Trre1g01516 210 Gene3D - 124 210 IPR012677 -
Trre1g01516 210 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 109 208 - -
Trre1g01516 210 SUPERFAMILY RNA-binding domain, RBD 108 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01516 Trre-Chr1 11481269 11485926 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01516 1 53 PHD Transcription Factor Family AT2G36720 50.943 1.52e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01516 - - gmx:100813445 104.375