Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01511 ATGCTTCAGAACATGAAGCTTTTACCAATGCCATGTCTTCTCTTGTTCTTTTGTTTGTTTTTAATGGCTACACCATTCCATGCTGCAACAAAAGTCCAAAGCAGCGAGGCAGATGCTCTGTTGAAGTGGAAAGCAAGCCTTGACCACAATAGTAAGGCTTTGCTTTCTTCATGGAATATTGGTAATAAGCATTGCAATTGGGTTGGAATCACATGTGATGACAAGTCAAAATCTATCGACAAGGTAAATCTTGCCAATATTGGACTAAAAGGTACACTTCAAAGTCTCAATTTTTCATCACTTTCAAAAGTCCGCAATTTAGTTTTATCGAACAACTCTTTTTATGGAGTTGTTCCACACCATATTGGTGTAATGTCCAATCTAAACACTCTTAATTTGTCACTAAATAATATCTCTGGTAGTATTCCCAATAGCGTTGGTAATTTGTCCAAATTATCTTATCTTGATCTCAGTTCAAATCATTTCACTGGAATTATTCCATCCGAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGTCTCATAACAATGATTTAAGTGGATCCCTCCCAAAAGAAATAAGTAGATTGAGGAATCTTACTACACTTAATTTCTCTTTCTGCAATCTCACTGGGTCTATACCAATATCAATAGGATTATTGACCAATTTAACGGTTCTCAGTTTAGATGAAAACCAACTTTTTGGCTATATTCCTCATGAAGTTGGATTTCTAAAACAACTCAAAACACTTGATTTGTCTGCTAACCATCTCTCAGGCACAATCCCTTCCACAATTGGAAACATGAGCAATTTATCTTTTCTTTACCTTTATCACAACCATCTCAATGGTAGCATTCCTAGTGAAGTTGGATTTCTAAAACAACTCGGTGAAATTGATTTCACAATAAACAATCTCTCTGGCACAATCCCTTCCACAATTGGAAACATGAGCAATTTATCTTTTCTTTACCTTTATGATAACTATCTAAGTGGTAGCATTCCTAGTGAAGTTGGATATCTAAAACAACTCGGTGAAATTGATTTGTCTTCTAACTATCTCTCTGGCACAATCCCTTCCACAATTGGAAACATGAGCAATTTATATTTTCTTTACCTTTATGATAACTATATAAGTGGTAGCATTCCTAGTGAAGTTGGAAATATTTATTCCCTTTCCACAATTCAGTTGGTAGGAAACAACCTCTTTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAAAATCTATACTCCTAGACCAAAATCAACTATCCGGACCAATTCCTTCCACTATTGGAAATTTGACAAAACTTAGTAGACTCGAAGTTCTCTCAAACAAGCTCAGTGGCAATATTCCAAAAGAAATGAATAAGATTACCAATTTAGAAAATTTGCAGTTAGCTGATAATAATTTCATAGGTCATTTACCTCACAACATTTGTGTTGGTGGGAAGTTAACTAGGTTCGCTGCTAAGAATAATCATTTCACAGGTTTAGTTCCAAAGAGTTTGAAGAATTGCTACAGTCTTGTGAGAGTTAGGCTAGAAGGCAATCAACTAGCTGACAATATAACAAATAGTTTTGGTGTGTATCCAAATTTGGACTACATGGAATTGAGTGATAATAATTTGTATGGTCATCTATCACCAAACTGGGGAAAGTGCAAGAATCTCACATCCCTTAAAATCTCCAATAACAATTTATCAGGAATCATCCCAAAAGACCTAGGTGGAGCAACTTTGTTAAATGTACTTAACTTGTCTTCAAACCATCTTATAGGAAACATTCCAAATGACATAGGCAACTTGACTTCATTGATTCAACTCTCGTTAAGTAACAATCACCTTTCAGGAGAAGTTCCCGTTCACATTGCATCACTTCAAAAACTATCAGCCTTAGAACTTGCAACAAATAATTTAAGTGGCTTCATCCTAGAACAACTTGGAAGCTTGTCTGGGTTATTGCACTTGAATATGAGCCAAAATAAGTTTCATGGAAACATTCCTGTTGATTTTGGCCATTTAAAAGTTCTTGAAGATCTTGATCTAAGTGGGAATTTTTTGAATGGAACCATACCAGCAATGCTTGGACAATTAAATAGCTTAGAAACATTGAATCTTTCAAATAATAATCTTTCTGGTACCATTCCCTTGAGCTCTGGTGAGATGTTAAGCTTGACAACTGTTGATATATCATACAACCAGTTAGAGGGTCCGATTCCAAGCATTCCAGCCTTTCAAAAAGCACACATTGAAGAACTGAGAAACAACAAAGACTTGTGTGGTAATGCCTCTAGCCTAAAGCTTTGTCCATCTAGTGGAAACTCTCATACTCCAAAGACTAACAAGACTTTGGTGCTAGTTTTACCCCTCACTCTAGGCACTGTATTGATAGCACTATTTTTTTATGGGTTCTCATATCATCTATGGCGAACTTCAAGAACTAAAGAAAACAAGGCTGAAGAATCACACACTGAAAATATATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAAAATTATTGAAGCCACAGAAGCGTTTGACAATAAGCATCTTATTGGGGTTGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGACAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGGAGAAGTGTCGAATTTGAAAGCTTTTGCAAGTGAGATTCAAGCTTTAACAGAAATCCGACATCGAAATATTGTGAAGTTATATGGATATTGCTCACATCCATTGCACTCATTTTTGGTATATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATTTTGAAAGATGATGAACTAGCAACTACATTTGATTGGAAAATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCGTGCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATGCAGAGTATGTTGCTCATGTTTCAGACTTTGGAACTGCTAAGTTTCTTAATCCCGATTCTTCCAACCGATCCGGATTTGTGGGCACATTTGGATATGCTGCACCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAACCACGGAAATACTTTTTGGAAAGCATCCCGGAGACATTGTATCTACTTTGTTGCAATCAAGTGGTATATACCTAACAATAGATGCTTTGTCGGTGAATGATAAGTTGGATCAACGCCTTCCTCGTCCTAGGAATGCTATCGGGAAAGAAGTGGTATCAATTATCAGAATTGCATGTCATTGCTTAATTGAAAGCCCACGCAGTCGCCCAACAATGGAGCAAGTTTGCAAGGAGATTGTAATGTCAAAGTCATCTTCAAATATAGCAATGGGATGA 3411 0.3618 MLQNMKLLPMPCLLLFFCLFLMATPFHAATKVQSSEADALLKWKASLDHNSKALLSSWNIGNKHCNWVGITCDDKSKSIDKVNLANIGLKGTLQSLNFSSLSKVRNLVLSNNSFYGVVPHHIGVMSNLNTLNLSLNNISGSIPNSVGNLSKLSYLDLSSNHFTGIIPSEITQLVGLYVLSMSHNNDLSGSLPKEISRLRNLTTLNFSFCNLTGSIPISIGLLTNLTVLSLDENQLFGYIPHEVGFLKQLKTLDLSANHLSGTIPSTIGNMSNLSFLYLYHNHLNGSIPSEVGFLKQLGEIDFTINNLSGTIPSTIGNMSNLSFLYLYDNYLSGSIPSEVGYLKQLGEIDLSSNYLSGTIPSTIGNMSNLYFLYLYDNYISGSIPSEVGNIYSLSTIQLVGNNLFGPIPSSIGNLINLKSILLDQNQLSGPIPSTIGNLTKLSRLEVLSNKLSGNIPKEMNKITNLENLQLADNNFIGHLPHNICVGGKLTRFAAKNNHFTGLVPKSLKNCYSLVRVRLEGNQLADNITNSFGVYPNLDYMELSDNNLYGHLSPNWGKCKNLTSLKISNNNLSGIIPKDLGGATLLNVLNLSSNHLIGNIPNDIGNLTSLIQLSLSNNHLSGEVPVHIASLQKLSALELATNNLSGFILEQLGSLSGLLHLNMSQNKFHGNIPVDFGHLKVLEDLDLSGNFLNGTIPAMLGQLNSLETLNLSNNNLSGTIPLSSGEMLSLTTVDISYNQLEGPIPSIPAFQKAHIEELRNNKDLCGNASSLKLCPSSGNSHTPKTNKTLVLVLPLTLGTVLIALFFYGFSYHLWRTSRTKENKAEESHTENIFAIWSFDGKMVYEKIIEATEAFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLQNGEVSNLKAFASEIQALTEIRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDKILKDDELATTFDWKMRVNAIKDIANALSYMHHDCSRAIVHRDISSKNVVLDAEYVAHVSDFGTAKFLNPDSSNRSGFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTTEILFGKHPGDIVSTLLQSSGIYLTIDALSVNDKLDQRLPRPRNAIGKEVVSIIRIACHCLIESPRSRPTMEQVCKEIVMSKSSSNIAMG 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01511 1136 SUPERFAMILY L domain-like 342 523 - -
Trre1g01511 1136 Gene3D Ribonuclease Inhibitor 290 382 IPR032675 -
Trre1g01511 1136 Gene3D Ribonuclease Inhibitor 185 289 IPR032675 -
Trre1g01511 1136 FunFam MDIS1-interacting receptor like kinase 2 932 1130 - -
Trre1g01511 1136 PANTHER LEUCINE RICH REPEAT KINASE 2 411 1130 - -
Trre1g01511 1136 PRINTS Leucine-rich repeat signature 702 715 - -
Trre1g01511 1136 PRINTS Leucine-rich repeat signature 249 262 - -
Trre1g01511 1136 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Trre1g01511 1136 SUPERFAMILY Protein kinase-like (PK-like) 834 1123 IPR011009 -
Trre1g01511 1136 ProSitePatterns Protein kinases ATP-binding region signature. 859 882 IPR017441 GO:0005524
Trre1g01511 1136 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 485 777 - -
Trre1g01511 1136 Gene3D Ribonuclease Inhibitor 383 484 IPR032675 -
Trre1g01511 1136 Pfam Protein kinase domain 854 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01511 1136 ProSiteProfiles Protein kinase domain profile. 853 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01511 1136 ProSiteProfiles Leucine-rich repeat profile. 704 725 IPR001611 GO:0005515
Trre1g01511 1136 Pfam Leucine Rich Repeat 704 722 IPR001611 GO:0005515
Trre1g01511 1136 FunFam Leucine-rich repeat receptor protein kinase MSP1 816 931 - -
Trre1g01511 1136 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Trre1g01511 1136 SUPERFAMILY L domain-like 171 404 - -
Trre1g01511 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 185 259 - -
Trre1g01511 1136 ProSitePatterns Tyrosine protein kinases specific active-site signature. 977 989 IPR008266 GO:0004672|GO:0006468
Trre1g01511 1136 SUPERFAMILY L domain-like 35 216 - -
Trre1g01511 1136 SUPERFAMILY L domain-like 529 765 - -
Trre1g01511 1136 Gene3D Phosphorylase Kinase; domain 1 813 931 - -
Trre1g01511 1136 FunFam Nuclear pore complex protein NUP107 33 184 - -
Trre1g01511 1136 Pfam Leucine rich repeat 223 283 IPR001611 GO:0005515
Trre1g01511 1136 Pfam Leucine rich repeat 535 595 IPR001611 GO:0005515
Trre1g01511 1136 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Trre1g01511 1136 Gene3D Transferase(Phosphotransferase) domain 1 932 1134 - -
Trre1g01511 1136 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 260 484 - -
Trre1g01511 1136 Gene3D Ribonuclease Inhibitor 485 781 IPR032675 -
Trre1g01511 1136 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Trre1g01511 1136 SMART LRR_typ_2 654 677 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 125 148 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 222 244 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 318 342 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 702 726 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 270 294 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 246 269 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 462 486 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 149 173 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 606 630 IPR003591 -
Trre1g01511 1136 SMART LRR_typ_2 414 438 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01511 Trre-Chr1 11441642 11445161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01511 9 578 Receptor kinase-like Gene Family AT4G08850 32.000 2.57e-78 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g01511 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01511 - - tpra:123910542 1375.15