Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01510 ATGCTTGGACAATTAAATTGCTTAGAAACATTGAATCTTTCACATAATAATCTTTCTGGTAACATTCCCTTGAGCTCTGGTGAGATGTTACGCTTGACAACTGTTGATATATCATACAGCCAGTTGGAGGGTCCGATTCCAACCATTCCAGCCTTTCAAAAAGCAAATATTGAAGAAATGAGAAACAACAAAGACTTGTGTGGTAATGTCTCTAGCCTAAAGCCTTGTCCAACACCTAGTGCCACAGAAGCGTTTGACAACAAGCATCTTATTGGGGTTGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGACAAGTTGTAGCTGTGAAGAAACTCCATTCGTTACAAAATGGAGAAATGTCGAATCTAAAAGCTTTTGCAAACTTTGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATTGGACTTCTTTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCACACACAATGGAAGTAAATGAGAAATGTGATGTGTACAGTTTTGGAATACTAACCTTGAGATACTTTTTGGGAAGCATCCTGGAGATGTTGTGTTAG 576 0.3941 MLGQLNCLETLNLSHNNLSGNIPLSSGEMLRLTTVDISYSQLEGPIPTIPAFQKANIEEMRNNKDLCGNVSSLKPCPTPSATEAFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLQNGEMSNLKAFANFGTSKFLNPNSSNWTSFAGTFGYAAPELAHTMEVNEKCDVYSFGILTLRYFLGSILEMLC 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01510 191 Gene3D Transferase(Phosphotransferase) domain 1 130 190 - -
Trre1g01510 191 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01510 191 SUPERFAMILY Protein kinase-like (PK-like) 77 186 IPR011009 -
Trre1g01510 191 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
Trre1g01510 191 Gene3D Phosphorylase Kinase; domain 1 81 129 - -
Trre1g01510 191 SUPERFAMILY L domain-like 2 77 - -
Trre1g01510 191 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Trre1g01510 191 PANTHER LEUCINE RICH REPEAT KINASE 2 130 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01510 Trre-Chr1 11436582 11437855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01510 5 91 Receptor kinase-like Gene Family AT4G08850 48.889 5.81e-19 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g01510 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01510 - - csin:114279593 219.55