Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g01507 | ATGCTTCAGAATATTAAGTTTTTACCAATGTGGTGTCTTCTTTTGCTCTTCTGTAATTTGTTTGTAAATGCCACACCATTTCATGCTGCAACAAAAATCCAAAGCAACGAGGCAAATGCTCTCTTGAAGTGGAAAGCAAGCCTATACAACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATAAGCATTGCAATTGGCTTGGAATCACTTGTGATGATGACTCAAAATCCATCTACAAGGTAAATCTCACCAATATTGGATTAAACGGTACGCTACAAAGTCTCAATTTTTCATCATTTTCAAAATTTCGTAGTTTAATTTTAAGAAACAACTCCTTCTACGGAGTTGTTCCAGACCATATTGGGTTGATGTCCGATCTAGAAACTCTTGATTTGTCACTAAATAAACTCTCTGGTAGCATTCCCAATAGCATTGGTAATTTGTCCAAACTATCTTATCTTGACCTCAGTCTCAATAATCTCAATGGGTCAATATCTATTTCTATTGGTAAGTTGACAAATCTATCAAATCTCCACTTACATGACAATCAACTTTTTGGCCACATTCCTCGTGAAATTGGGAATTTGGTTAATCTCAAGAAGTTATATCTTGGAATTAATAATCTTTCTGGCTTTATTCCTCGAGAAGTTGGATTTTTAAAACAACTAAATGAACTTGATTTGTCTGCTAACCATCTCTCGGGCACAATCCCTTCTACAATTGGAAACTTGAGCAATTTATATTTTCTTTACCTTTATGATAACTATCTAAGTGGTAGCATTCCAAGTGAAGTTGGAAATCTTTATTCCCTTTCCACAATTCAGTTGGTAGGAAACAACCTCTCTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAGAATCTATGATCCTTAACCGAAATAATCTATCTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAACTTAGTATACTGACCATTTTCTCAAATAAGCTAAGTGGCAATATTCCAAAAGAAATGAATAGGCTTATAAATATTGAATTATTTGAGTTAAGTGATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAAAGCTCAAAGTTTTCAATGGCCATGATAATCGATTCACAGGCCCTATTCCAGAGAGTTTGAATAGTTGCTCGAGCCTTACGAGAGTCAGGTTAGAGAAAAACCAACTAACCGGAAATGTAGAAGATATGTTTGATGTGTATCCAAATTTAGACTACATCGATTTGAGTGATAATAATTTTTTCGGCCATCTATCGCCGAAATGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAACAATAATTTATCAGGAAACATATCACTAGAACTAGGTGGAGCAACAAATTTACATGTACTTGACTTATCTTCAAACCACCTTACAGGAAAAATTCCAAAGTACCTAGGAAATTTGACATCCTTGTTACAACTCTCATTAAATAGCAATCATTTTTTTGGAGAAGTTCCTATAGAAATTGCATCATTGCAGGAACTAACTACTTTGGATCTTGCAGCCAATAATTTAAGTGGCTTTATCCCAAAACAACTTGGATTGTTACCTATGTTATTAAGTTTGAACTTGAGCCAAAATAAATTTGATGGAAACATTCCTTTTGTGATTGGTCAATTACAAGTGATTCAAAATCTTGATCTTAGTGGGAACTTTTTAGATGGAACCATACCAGAAATGTTTGGACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTACCATTCCTTTGAGCTATAGTGAGATGTTAAGTTTGACGATTGTTGATATATCTTACAACCAATTGGAGGGTCCGATTCCAAACATTCCGGCCTTCAAAAATGCTCCAATTGAAGCCCTTAAAAATAACAAAGGGTTGTGTGGTAATGTCTCAGGCCTAGAGCTTTGCTCAACATTAGGTAGCAACTTTCATAGTCATAAGACTAACAAAATTTTGGTGCTAGTTTTACCCCTCACTCTAGGCACTTTATTGTTAGCATTATTTGTTTATTGGCTCTCATACATTTTATACCAAACTTTAAGAACAAAAGAAGATAAACATGCAGAAGAAGTTCAAACAAATAATCTATTTGCAATATGGAGTTTTGATGGCCAAATAGTGTATGAAAACATTATCGAAGCCACGGAACAATTTGACAACAAACATCTCATTGGGGTAGGAGGGCATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTGGTAGCTGTGAAGAAACTCCATTCATTAGAAAATGGAGATGTGTCTAATCTAAAAGCTTTTGCAAGTGAGATAAGTGCTTTGACAGAAATCCGACATCGGAACATTGTAAAGTTATATGGATATTGTTCACATTCACTACACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATCTTGAAAGATGATGAACTAGCAACTGCATTTGATTGGAAAATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCCCTCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATTCAGAGTATGTAGCTCATGTTTCAGACTTTGGAACCGCCAAGTTTCTCAATCCTGATTCTTCCAACCGAACCGTTTTCGTAGGCACCTTTGGATATGCAGCACCAGAACTTGCATACACAATGGAGGTAAATGAAAAATGTGATGTGTATAGTTTTGGAGTATTAACTTTGGAAATACTTTTTGGGATGCACCCTGGAGATATTGTAACTTCTTTATGGCAACAACCTTCACAGAGTGGTATGGACATTACACTTGATAATATGCCATTGATAGATAAATGTGACCAACGTCTCCCTCAACCTACAGATACTATTGTTAAGGAGTTGGTATCAATGATAAGAGTAGCAATTTATTGCTTGATTGAAAGTCCACGTTCTCGCCCTGCTATGGAGCAGGTTTGTAAGGAGCTTGTGATGTCAAAGTCATCTTGA | 3048 | 0.354 | MLQNIKFLPMWCLLLLFCNLFVNATPFHAATKIQSNEANALLKWKASLYNNSKALLSSWNIGNKHCNWLGITCDDDSKSIYKVNLTNIGLNGTLQSLNFSSFSKFRSLILRNNSFYGVVPDHIGLMSDLETLDLSLNKLSGSIPNSIGNLSKLSYLDLSLNNLNGSISISIGKLTNLSNLHLHDNQLFGHIPREIGNLVNLKKLYLGINNLSGFIPREVGFLKQLNELDLSANHLSGTIPSTIGNLSNLYFLYLYDNYLSGSIPSEVGNLYSLSTIQLVGNNLSGPIPSSIGNLINLESMILNRNNLSGPIPSTIGNLTKLSILTIFSNKLSGNIPKEMNRLINIELFELSDNNFIGHLPQNICVGGKLKVFNGHDNRFTGPIPESLNSCSSLTRVRLEKNQLTGNVEDMFDVYPNLDYIDLSDNNFFGHLSPKWGKCKNLTSLKISNNNLSGNISLELGGATNLHVLDLSSNHLTGKIPKYLGNLTSLLQLSLNSNHFFGEVPIEIASLQELTTLDLAANNLSGFIPKQLGLLPMLLSLNLSQNKFDGNIPFVIGQLQVIQNLDLSGNFLDGTIPEMFGQLKYLETLNLSHNNLSGTIPLSYSEMLSLTIVDISYNQLEGPIPNIPAFKNAPIEALKNNKGLCGNVSGLELCSTLGSNFHSHKTNKILVLVLPLTLGTLLLALFVYWLSYILYQTLRTKEDKHAEEVQTNNLFAIWSFDGQIVYENIIEATEQFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLENGDVSNLKAFASEISALTEIRHRNIVKLYGYCSHSLHSFLVYEFLEKGSVDKILKDDELATAFDWKMRVNAIKDIANALSYMHHDCSPSIVHRDISSKNVVLDSEYVAHVSDFGTAKFLNPDSSNRTVFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTLEILFGMHPGDIVTSLWQQPSQSGMDITLDNMPLIDKCDQRLPQPTDTIVKELVSMIRVAIYCLIESPRSRPAMEQVCKELVMSKSS | 1015 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 534 | 558 | IPR003591 | - | |
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 126 | 150 | IPR003591 | - | |
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 174 | 198 | IPR003591 | - | |
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 222 | 246 | IPR003591 | - | |
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 294 | 318 | IPR003591 | - | |
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 463 | 486 | IPR003591 | - | |
Trre1g01507 | 1015 | SMART | LRR_typ_2 | 510 | 533 | IPR003591 | - | |
Trre1g01507 | 1015 | SUPERFAMILY | Protein kinase-like (PK-like) | 717 | 1010 | IPR011009 | - | |
Trre1g01507 | 1015 | Gene3D | Ribonuclease Inhibitor | 185 | 273 | IPR032675 | - | |
Trre1g01507 | 1015 | Pfam | Leucine rich repeat N-terminal domain | 36 | 74 | IPR013210 | - | |
Trre1g01507 | 1015 | FunFam | Nuclear pore complex protein NUP107 | 34 | 189 | - | - | |
Trre1g01507 | 1015 | Gene3D | Ribonuclease Inhibitor | 33 | 184 | IPR032675 | - | |
Trre1g01507 | 1015 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 698 | 813 | - | - | |
Trre1g01507 | 1015 | SMART | LRR_sd22_2 | 462 | 488 | - | - | |
Trre1g01507 | 1015 | SMART | LRR_sd22_2 | 126 | 152 | - | - | |
Trre1g01507 | 1015 | SMART | LRR_sd22_2 | 222 | 248 | - | - | |
Trre1g01507 | 1015 | SMART | LRR_sd22_2 | 510 | 531 | - | - | |
Trre1g01507 | 1015 | SMART | LRR_sd22_2 | 174 | 200 | - | - | |
Trre1g01507 | 1015 | ProSiteProfiles | Protein kinase domain profile. | 735 | 1011 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre1g01507 | 1015 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 80 | 177 | - | - | |
Trre1g01507 | 1015 | ProSiteProfiles | Leucine-rich repeat profile. | 584 | 605 | IPR001611 | GO:0005515 | |
Trre1g01507 | 1015 | Gene3D | Ribonuclease Inhibitor | 350 | 654 | IPR032675 | - | |
Trre1g01507 | 1015 | ProSiteProfiles | Leucine-rich repeat profile. | 128 | 150 | IPR001611 | GO:0005515 | |
Trre1g01507 | 1015 | ProSitePatterns | Protein kinases ATP-binding region signature. | 741 | 764 | IPR017441 | GO:0005524 | |
Trre1g01507 | 1015 | FunFam | MDIS1-interacting receptor like kinase 2 | 814 | 1015 | - | - | |
Trre1g01507 | 1015 | Pfam | Protein kinase domain | 736 | 1008 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre1g01507 | 1015 | SUPERFAMILY | L domain-like | 64 | 405 | - | - | |
Trre1g01507 | 1015 | FunFam | MDIS1-interacting receptor like kinase 2 isoform A | 266 | 363 | - | - | |
Trre1g01507 | 1015 | ProSiteProfiles | Leucine-rich repeat profile. | 464 | 486 | IPR001611 | GO:0005515 | |
Trre1g01507 | 1015 | Gene3D | Ribonuclease Inhibitor | 274 | 347 | IPR032675 | - | |
Trre1g01507 | 1015 | Gene3D | Phosphorylase Kinase; domain 1 | 695 | 813 | - | - | |
Trre1g01507 | 1015 | PRINTS | Leucine-rich repeat signature | 582 | 595 | - | - | |
Trre1g01507 | 1015 | PRINTS | Leucine-rich repeat signature | 129 | 142 | - | - | |
Trre1g01507 | 1015 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 859 | 871 | IPR008266 | GO:0004672|GO:0006468 | |
Trre1g01507 | 1015 | FunFam | Uncharacterized protein | 364 | 664 | - | - | |
Trre1g01507 | 1015 | SUPERFAMILY | RNI-like | 302 | 625 | - | - | |
Trre1g01507 | 1015 | Gene3D | Transferase(Phosphotransferase) domain 1 | 814 | 1015 | - | - | |
Trre1g01507 | 1015 | Pfam | Leucine rich repeat | 106 | 163 | IPR001611 | GO:0005515 | |
Trre1g01507 | 1015 | Pfam | Leucine rich repeat | 175 | 235 | IPR001611 | GO:0005515 | |
Trre1g01507 | 1015 | Pfam | Leucine rich repeat | 562 | 619 | IPR001611 | GO:0005515 | |
Trre1g01507 | 1015 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 197 | 265 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g01507 | Trre-Chr1 | 11412673 | 11415831 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g01507 | 14 | 907 | Receptor kinase-like Gene Family | AT4G08850 | 44.828 | 0.0 | 746 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Trre1g01507 | Pkinase | 1.3e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g01507 | - | - | tpra:123910542 | 1278.46 |