Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01507 ATGCTTCAGAATATTAAGTTTTTACCAATGTGGTGTCTTCTTTTGCTCTTCTGTAATTTGTTTGTAAATGCCACACCATTTCATGCTGCAACAAAAATCCAAAGCAACGAGGCAAATGCTCTCTTGAAGTGGAAAGCAAGCCTATACAACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATAAGCATTGCAATTGGCTTGGAATCACTTGTGATGATGACTCAAAATCCATCTACAAGGTAAATCTCACCAATATTGGATTAAACGGTACGCTACAAAGTCTCAATTTTTCATCATTTTCAAAATTTCGTAGTTTAATTTTAAGAAACAACTCCTTCTACGGAGTTGTTCCAGACCATATTGGGTTGATGTCCGATCTAGAAACTCTTGATTTGTCACTAAATAAACTCTCTGGTAGCATTCCCAATAGCATTGGTAATTTGTCCAAACTATCTTATCTTGACCTCAGTCTCAATAATCTCAATGGGTCAATATCTATTTCTATTGGTAAGTTGACAAATCTATCAAATCTCCACTTACATGACAATCAACTTTTTGGCCACATTCCTCGTGAAATTGGGAATTTGGTTAATCTCAAGAAGTTATATCTTGGAATTAATAATCTTTCTGGCTTTATTCCTCGAGAAGTTGGATTTTTAAAACAACTAAATGAACTTGATTTGTCTGCTAACCATCTCTCGGGCACAATCCCTTCTACAATTGGAAACTTGAGCAATTTATATTTTCTTTACCTTTATGATAACTATCTAAGTGGTAGCATTCCAAGTGAAGTTGGAAATCTTTATTCCCTTTCCACAATTCAGTTGGTAGGAAACAACCTCTCTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAGAATCTATGATCCTTAACCGAAATAATCTATCTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAACTTAGTATACTGACCATTTTCTCAAATAAGCTAAGTGGCAATATTCCAAAAGAAATGAATAGGCTTATAAATATTGAATTATTTGAGTTAAGTGATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAAAGCTCAAAGTTTTCAATGGCCATGATAATCGATTCACAGGCCCTATTCCAGAGAGTTTGAATAGTTGCTCGAGCCTTACGAGAGTCAGGTTAGAGAAAAACCAACTAACCGGAAATGTAGAAGATATGTTTGATGTGTATCCAAATTTAGACTACATCGATTTGAGTGATAATAATTTTTTCGGCCATCTATCGCCGAAATGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAACAATAATTTATCAGGAAACATATCACTAGAACTAGGTGGAGCAACAAATTTACATGTACTTGACTTATCTTCAAACCACCTTACAGGAAAAATTCCAAAGTACCTAGGAAATTTGACATCCTTGTTACAACTCTCATTAAATAGCAATCATTTTTTTGGAGAAGTTCCTATAGAAATTGCATCATTGCAGGAACTAACTACTTTGGATCTTGCAGCCAATAATTTAAGTGGCTTTATCCCAAAACAACTTGGATTGTTACCTATGTTATTAAGTTTGAACTTGAGCCAAAATAAATTTGATGGAAACATTCCTTTTGTGATTGGTCAATTACAAGTGATTCAAAATCTTGATCTTAGTGGGAACTTTTTAGATGGAACCATACCAGAAATGTTTGGACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTACCATTCCTTTGAGCTATAGTGAGATGTTAAGTTTGACGATTGTTGATATATCTTACAACCAATTGGAGGGTCCGATTCCAAACATTCCGGCCTTCAAAAATGCTCCAATTGAAGCCCTTAAAAATAACAAAGGGTTGTGTGGTAATGTCTCAGGCCTAGAGCTTTGCTCAACATTAGGTAGCAACTTTCATAGTCATAAGACTAACAAAATTTTGGTGCTAGTTTTACCCCTCACTCTAGGCACTTTATTGTTAGCATTATTTGTTTATTGGCTCTCATACATTTTATACCAAACTTTAAGAACAAAAGAAGATAAACATGCAGAAGAAGTTCAAACAAATAATCTATTTGCAATATGGAGTTTTGATGGCCAAATAGTGTATGAAAACATTATCGAAGCCACGGAACAATTTGACAACAAACATCTCATTGGGGTAGGAGGGCATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTGGTAGCTGTGAAGAAACTCCATTCATTAGAAAATGGAGATGTGTCTAATCTAAAAGCTTTTGCAAGTGAGATAAGTGCTTTGACAGAAATCCGACATCGGAACATTGTAAAGTTATATGGATATTGTTCACATTCACTACACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATCTTGAAAGATGATGAACTAGCAACTGCATTTGATTGGAAAATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCCCTCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATTCAGAGTATGTAGCTCATGTTTCAGACTTTGGAACCGCCAAGTTTCTCAATCCTGATTCTTCCAACCGAACCGTTTTCGTAGGCACCTTTGGATATGCAGCACCAGAACTTGCATACACAATGGAGGTAAATGAAAAATGTGATGTGTATAGTTTTGGAGTATTAACTTTGGAAATACTTTTTGGGATGCACCCTGGAGATATTGTAACTTCTTTATGGCAACAACCTTCACAGAGTGGTATGGACATTACACTTGATAATATGCCATTGATAGATAAATGTGACCAACGTCTCCCTCAACCTACAGATACTATTGTTAAGGAGTTGGTATCAATGATAAGAGTAGCAATTTATTGCTTGATTGAAAGTCCACGTTCTCGCCCTGCTATGGAGCAGGTTTGTAAGGAGCTTGTGATGTCAAAGTCATCTTGA 3048 0.354 MLQNIKFLPMWCLLLLFCNLFVNATPFHAATKIQSNEANALLKWKASLYNNSKALLSSWNIGNKHCNWLGITCDDDSKSIYKVNLTNIGLNGTLQSLNFSSFSKFRSLILRNNSFYGVVPDHIGLMSDLETLDLSLNKLSGSIPNSIGNLSKLSYLDLSLNNLNGSISISIGKLTNLSNLHLHDNQLFGHIPREIGNLVNLKKLYLGINNLSGFIPREVGFLKQLNELDLSANHLSGTIPSTIGNLSNLYFLYLYDNYLSGSIPSEVGNLYSLSTIQLVGNNLSGPIPSSIGNLINLESMILNRNNLSGPIPSTIGNLTKLSILTIFSNKLSGNIPKEMNRLINIELFELSDNNFIGHLPQNICVGGKLKVFNGHDNRFTGPIPESLNSCSSLTRVRLEKNQLTGNVEDMFDVYPNLDYIDLSDNNFFGHLSPKWGKCKNLTSLKISNNNLSGNISLELGGATNLHVLDLSSNHLTGKIPKYLGNLTSLLQLSLNSNHFFGEVPIEIASLQELTTLDLAANNLSGFIPKQLGLLPMLLSLNLSQNKFDGNIPFVIGQLQVIQNLDLSGNFLDGTIPEMFGQLKYLETLNLSHNNLSGTIPLSYSEMLSLTIVDISYNQLEGPIPNIPAFKNAPIEALKNNKGLCGNVSGLELCSTLGSNFHSHKTNKILVLVLPLTLGTLLLALFVYWLSYILYQTLRTKEDKHAEEVQTNNLFAIWSFDGQIVYENIIEATEQFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLENGDVSNLKAFASEISALTEIRHRNIVKLYGYCSHSLHSFLVYEFLEKGSVDKILKDDELATAFDWKMRVNAIKDIANALSYMHHDCSPSIVHRDISSKNVVLDSEYVAHVSDFGTAKFLNPDSSNRTVFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTLEILFGMHPGDIVTSLWQQPSQSGMDITLDNMPLIDKCDQRLPQPTDTIVKELVSMIRVAIYCLIESPRSRPAMEQVCKELVMSKSS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01507 1015 SMART LRR_typ_2 534 558 IPR003591 -
Trre1g01507 1015 SMART LRR_typ_2 126 150 IPR003591 -
Trre1g01507 1015 SMART LRR_typ_2 174 198 IPR003591 -
Trre1g01507 1015 SMART LRR_typ_2 222 246 IPR003591 -
Trre1g01507 1015 SMART LRR_typ_2 294 318 IPR003591 -
Trre1g01507 1015 SMART LRR_typ_2 463 486 IPR003591 -
Trre1g01507 1015 SMART LRR_typ_2 510 533 IPR003591 -
Trre1g01507 1015 SUPERFAMILY Protein kinase-like (PK-like) 717 1010 IPR011009 -
Trre1g01507 1015 Gene3D Ribonuclease Inhibitor 185 273 IPR032675 -
Trre1g01507 1015 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Trre1g01507 1015 FunFam Nuclear pore complex protein NUP107 34 189 - -
Trre1g01507 1015 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Trre1g01507 1015 FunFam Leucine-rich repeat receptor protein kinase MSP1 698 813 - -
Trre1g01507 1015 SMART LRR_sd22_2 462 488 - -
Trre1g01507 1015 SMART LRR_sd22_2 126 152 - -
Trre1g01507 1015 SMART LRR_sd22_2 222 248 - -
Trre1g01507 1015 SMART LRR_sd22_2 510 531 - -
Trre1g01507 1015 SMART LRR_sd22_2 174 200 - -
Trre1g01507 1015 ProSiteProfiles Protein kinase domain profile. 735 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01507 1015 PANTHER LEUCINE RICH REPEAT KINASE 2 80 177 - -
Trre1g01507 1015 ProSiteProfiles Leucine-rich repeat profile. 584 605 IPR001611 GO:0005515
Trre1g01507 1015 Gene3D Ribonuclease Inhibitor 350 654 IPR032675 -
Trre1g01507 1015 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Trre1g01507 1015 ProSitePatterns Protein kinases ATP-binding region signature. 741 764 IPR017441 GO:0005524
Trre1g01507 1015 FunFam MDIS1-interacting receptor like kinase 2 814 1015 - -
Trre1g01507 1015 Pfam Protein kinase domain 736 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01507 1015 SUPERFAMILY L domain-like 64 405 - -
Trre1g01507 1015 FunFam MDIS1-interacting receptor like kinase 2 isoform A 266 363 - -
Trre1g01507 1015 ProSiteProfiles Leucine-rich repeat profile. 464 486 IPR001611 GO:0005515
Trre1g01507 1015 Gene3D Ribonuclease Inhibitor 274 347 IPR032675 -
Trre1g01507 1015 Gene3D Phosphorylase Kinase; domain 1 695 813 - -
Trre1g01507 1015 PRINTS Leucine-rich repeat signature 582 595 - -
Trre1g01507 1015 PRINTS Leucine-rich repeat signature 129 142 - -
Trre1g01507 1015 ProSitePatterns Tyrosine protein kinases specific active-site signature. 859 871 IPR008266 GO:0004672|GO:0006468
Trre1g01507 1015 FunFam Uncharacterized protein 364 664 - -
Trre1g01507 1015 SUPERFAMILY RNI-like 302 625 - -
Trre1g01507 1015 Gene3D Transferase(Phosphotransferase) domain 1 814 1015 - -
Trre1g01507 1015 Pfam Leucine rich repeat 106 163 IPR001611 GO:0005515
Trre1g01507 1015 Pfam Leucine rich repeat 175 235 IPR001611 GO:0005515
Trre1g01507 1015 Pfam Leucine rich repeat 562 619 IPR001611 GO:0005515
Trre1g01507 1015 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 197 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01507 Trre-Chr1 11412673 11415831 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01507 14 907 Receptor kinase-like Gene Family AT4G08850 44.828 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g01507 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01507 - - tpra:123910542 1278.46