Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g01504 | ATGCTTCAGAACATGAAGTTTTTACCAATGCCATGTCTTCTCTTGTTCTTTTGTTTGTTTTTAATGGCTACACCATTTCATGCTGCAACAAAAGTCCAAAGCAGCGAGGCAGATGCTCTGTTGAAGTGGAAAGCAAGCCTAGACAACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATAAGCATTGCAATTGGGTTGGAATCACATGCGATGACAAGTCAAAATCTATCGACAAGGTAAATCTTGCCAATATTGGACTAAAAGGTACACTTCAAAGTCTCAATTTTTCATCACTTTCAAAAGTCCGCAATTTAGTTTTATCGAACAACTCTTTCTATGGAGTTGTTCCACAACATATTGGTGTAATGTCCAATCTAAACACTCTTAATTTGTCAGTAAATAATCTCTCTGGTAGTATTCCCAATAGCGTTGGTAATTTGTCCAAATTATCTTATCTTGGTCTCAGTACAAATCATTTCACTGGAATTATTCCATCTGAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGTCTCATAACAATGATTTAAGTGGATCCCTCCCAAAAGAAATAAGTAGATTGAGGAATCTTACTACACTTGATTTCTCTTCCTGCAATCTCACAGGGACTATACCTATCTCAATAGAAAAGATAACCAATTTGTCACATCTTGATTTGGGAGTAAACAATTTTTATGGCAGCATTCCTAAGAGAATATGGAAAATGGACCTAAAGTATTTGGCATTTGGAACTAATTACTTCATTGGTTCTATCCCACAAGAAGTTTTCCAGTTAAGAAACCTTGAGGGTTTAGCTATCCAAAGTAGTGGTCTTACTGGTTCCATGCCAGAGGATCTTCAAATGGTGAAGAATTTAAAAAAAGTTTTAATTGGTGGATGCAATCTCACTGGGTCTATACCAATATCAATAGGATTATTAACCAATTTAACGTTTCTCAGTTTAGCTGGAAACCAACTTTTTGGCCATATTCCTCATGAAGTTGGATTTCTAAAACAACTCGTAACACTTGATTTGCCTGCTAACCATCTCTCTGGCACAATCCCATCCACAATTGGAAACATGAGCAATTTATCTTTTCTTTACCTTTATGACAACCATCTCAACGGTAGCATTCCTAGTGAAGTTGGAAATTTGATAAATTTAAAATTTATGGGCCTTAACCAAAATAAACTATCTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAACTTAGTACACTTTCTATTTTTTCAAATAACCTCAGTGGCAATATTCCAAAAGAAATGAATAAGATTACCAATTTAGAAAGTTTGCATTTAGCTTATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAATGTTAACCAAGTTCACCGCTAGTGATAATCATTTCACAGGCTTAGTTCCAAAGAGTTTGAAGAATTGCTCCAGTCTTGTGAGAGTTAGGCTTCAAGGCAATCAGCTAACTGACAATATAACAAATAGTTTTGGTGTGTATCCAAATTTGGACTACATGGAATTGAGTGATAATAATTTGTATGGTCATCTATCATCAAATTGGGGAAAGTGCAAGAATCTCACATCCCTTAAAATCTCCAACAACAATTTATCAGGAATCATCCCAAAAGAACTAGGTGGAGCAACTCGGATAACTATACTTAACTTGTCTTCAAACCATCTTATAGGAAACATTCCAAATGACATAGGCAACTTGACTTCATTGATCCAACTCTCGTTAAGTAACAATCACCTTTCAGGAGAAGTTCCTCTTCACATTGCATCACTTCATAAACTATCAGCCTTAGAACTTGCATCAAATAATTTAAGTGGCTTCATCCCAGAACAACTTGGAAGCTTGTCTGGGTTATTTCACTTGAATATGAGCCAAAATAAGTTTCATGGAAACATTCCTCGTGATTTTGGCCATTTAAAAGTTCTTGAAGATCTTGATCTAAGTGGCAATTTTTTGAATGGAACCATACCAGCAATGCTTGGACAATTAAATTGCTTAGAAACATTGAATCTTTCACATAATAATCTTTCTGGTACCATTCCCTTGAGCTCTGGTGAGATGTTAAGCTTGACAACTGTTGATATATCATACAACCGGTTTGAGGGTCCGATTCCAACCATTCCAGCCTTTCAAAAAGCAAATATTGAAGAACTGAGAAACAACAAAGACTTGTGTGGTAATGCCTCTAGCCTAAAGCTTTGTCCATCTAGTGGTAACTCTCATACTCCAAAGACTAACAAGATTTTGGTACTAGTCTTACCCCTCACTCTAGGCACTGTATTGATAGCACTATTTGTTTATGGGTTCTCATATCATCTATGGAGAACTTCAAGAACAAAAGAAAACAATGTTGCTGAAGAATCACACACTGAAAATCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTGTTGAAGCCACAGAAGAGTTTGACAGCAAGCATCTTATTGGGGTTGGAGGACATGGAAGTGTTTTCAAAGCAGAGTTGCCTACAGGACAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGGAGAAGTGTCGAATTTGAAAGCTTTTGCAAGTGAGATCCAAGCATTAACAGAAATCCGACATCGAAACATTGTGAAGTTATATGGATATTGCTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATTTTGAAAGATGATGAACTAGCAACTACATTTGATTGGAAAATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCCTGCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATGCAGAGTATGTTGCTCATATTTCAGACTTTGGAACTGCTAAGTTTCTTAATCCCGATTCTTCCAACCGATCCGGATTTGTGGGCACATTTGGATATGCTGCACCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTTTTAACCATGGAAATACTTTTTGGAAAGCATCCCAGCGGAGACATTGTATCTACTTTGTTGCAATCAAGTGGTATATACCTAACAATTGATGCTTTGTCGGTGAATGATAAGTTGGATCAACGCCTTCCTCGTCCTACGGATGCTATCAGGAAAGAAGTGGTATCAATTATCAGAATTGCATGTCATTGCTTAATTGAAAGCCCACGTAGTCGCCCAACAATGGAACAAGTTTGCAAGGAGATTGTAATGTCAAAGTCATCTTCAAATATAGCAATAATGGGATGA | 3345 | 0.3626 | MLQNMKFLPMPCLLLFFCLFLMATPFHAATKVQSSEADALLKWKASLDNNSKALLSSWNIGNKHCNWVGITCDDKSKSIDKVNLANIGLKGTLQSLNFSSLSKVRNLVLSNNSFYGVVPQHIGVMSNLNTLNLSVNNLSGSIPNSVGNLSKLSYLGLSTNHFTGIIPSEITQLVGLYVLSMSHNNDLSGSLPKEISRLRNLTTLDFSSCNLTGTIPISIEKITNLSHLDLGVNNFYGSIPKRIWKMDLKYLAFGTNYFIGSIPQEVFQLRNLEGLAIQSSGLTGSMPEDLQMVKNLKKVLIGGCNLTGSIPISIGLLTNLTFLSLAGNQLFGHIPHEVGFLKQLVTLDLPANHLSGTIPSTIGNMSNLSFLYLYDNHLNGSIPSEVGNLINLKFMGLNQNKLSGPIPSTIGNLTKLSTLSIFSNNLSGNIPKEMNKITNLESLHLAYNNFIGHLPQNICVGGMLTKFTASDNHFTGLVPKSLKNCSSLVRVRLQGNQLTDNITNSFGVYPNLDYMELSDNNLYGHLSSNWGKCKNLTSLKISNNNLSGIIPKELGGATRITILNLSSNHLIGNIPNDIGNLTSLIQLSLSNNHLSGEVPLHIASLHKLSALELASNNLSGFIPEQLGSLSGLFHLNMSQNKFHGNIPRDFGHLKVLEDLDLSGNFLNGTIPAMLGQLNCLETLNLSHNNLSGTIPLSSGEMLSLTTVDISYNRFEGPIPTIPAFQKANIEELRNNKDLCGNASSLKLCPSSGNSHTPKTNKILVLVLPLTLGTVLIALFVYGFSYHLWRTSRTKENNVAEESHTENLFAIWSFDGKMVYENIVEATEEFDSKHLIGVGGHGSVFKAELPTGQVVAVKKLHSLQNGEVSNLKAFASEIQALTEIRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDKILKDDELATTFDWKMRVNAIKDIANALSYMHHDCSPAIVHRDISSKNVVLDAEYVAHISDFGTAKFLNPDSSNRSGFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTMEILFGKHPSGDIVSTLLQSSGIYLTIDALSVNDKLDQRLPRPTDAIRKEVVSIIRIACHCLIESPRSRPTMEQVCKEIVMSKSSSNIAIMG | 1114 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g01504 | 1114 | SUPERFAMILY | Protein kinase-like (PK-like) | 812 | 1100 | IPR011009 | - | |
Trre1g01504 | 1114 | Pfam | Leucine rich repeat N-terminal domain | 35 | 73 | IPR013210 | - | |
Trre1g01504 | 1114 | Gene3D | Ribonuclease Inhibitor | 34 | 187 | IPR032675 | - | |
Trre1g01504 | 1114 | Gene3D | Ribonuclease Inhibitor | 188 | 247 | IPR032675 | - | |
Trre1g01504 | 1114 | Gene3D | Transferase(Phosphotransferase) domain 1 | 908 | 1111 | - | - | |
Trre1g01504 | 1114 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 791 | 907 | - | - | |
Trre1g01504 | 1114 | Gene3D | Ribonuclease Inhibitor | 460 | 756 | IPR032675 | - | |
Trre1g01504 | 1114 | Gene3D | Ribonuclease Inhibitor | 248 | 459 | IPR032675 | - | |
Trre1g01504 | 1114 | ProSitePatterns | Protein kinases ATP-binding region signature. | 835 | 858 | IPR017441 | GO:0005524 | |
Trre1g01504 | 1114 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 244 | 460 | - | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 677 | 701 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 125 | 149 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 222 | 246 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 437 | 461 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 317 | 341 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 605 | 629 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 581 | 604 | IPR003591 | - | |
Trre1g01504 | 1114 | SMART | LRR_typ_2 | 365 | 389 | IPR003591 | - | |
Trre1g01504 | 1114 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 953 | 965 | IPR008266 | GO:0004672|GO:0006468 | |
Trre1g01504 | 1114 | Pfam | Leucine rich repeat | 103 | 162 | IPR001611 | GO:0005515 | |
Trre1g01504 | 1114 | Pfam | Leucine rich repeat | 607 | 664 | IPR001611 | GO:0005515 | |
Trre1g01504 | 1114 | SUPERFAMILY | L domain-like | 35 | 378 | - | - | |
Trre1g01504 | 1114 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 74 | 389 | - | - | |
Trre1g01504 | 1114 | FunFam | MDIS1-interacting receptor like kinase 2 | 908 | 1107 | - | - | |
Trre1g01504 | 1114 | Pfam | Protein kinase domain | 831 | 1100 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre1g01504 | 1114 | ProSiteProfiles | Protein kinase domain profile. | 829 | 1103 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre1g01504 | 1114 | Gene3D | Phosphorylase Kinase; domain 1 | 789 | 907 | - | - | |
Trre1g01504 | 1114 | FunFam | Nuclear pore complex protein NUP107 | 33 | 193 | - | - | |
Trre1g01504 | 1114 | FunFam | Uncharacterized protein | 461 | 756 | - | - | |
Trre1g01504 | 1114 | SUPERFAMILY | RNI-like | 406 | 721 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g01504 | Trre-Chr1 | 11400304 | 11403757 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g01504 | 9 | 1001 | Receptor kinase-like Gene Family | AT4G08850 | 40.877 | 0.0 | 706 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Trre1g01504 | Pkinase | 7.6e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g01504 | - | - | gmx:100808316 | 1281.16 |