Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01504 ATGCTTCAGAACATGAAGTTTTTACCAATGCCATGTCTTCTCTTGTTCTTTTGTTTGTTTTTAATGGCTACACCATTTCATGCTGCAACAAAAGTCCAAAGCAGCGAGGCAGATGCTCTGTTGAAGTGGAAAGCAAGCCTAGACAACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATAAGCATTGCAATTGGGTTGGAATCACATGCGATGACAAGTCAAAATCTATCGACAAGGTAAATCTTGCCAATATTGGACTAAAAGGTACACTTCAAAGTCTCAATTTTTCATCACTTTCAAAAGTCCGCAATTTAGTTTTATCGAACAACTCTTTCTATGGAGTTGTTCCACAACATATTGGTGTAATGTCCAATCTAAACACTCTTAATTTGTCAGTAAATAATCTCTCTGGTAGTATTCCCAATAGCGTTGGTAATTTGTCCAAATTATCTTATCTTGGTCTCAGTACAAATCATTTCACTGGAATTATTCCATCTGAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGTCTCATAACAATGATTTAAGTGGATCCCTCCCAAAAGAAATAAGTAGATTGAGGAATCTTACTACACTTGATTTCTCTTCCTGCAATCTCACAGGGACTATACCTATCTCAATAGAAAAGATAACCAATTTGTCACATCTTGATTTGGGAGTAAACAATTTTTATGGCAGCATTCCTAAGAGAATATGGAAAATGGACCTAAAGTATTTGGCATTTGGAACTAATTACTTCATTGGTTCTATCCCACAAGAAGTTTTCCAGTTAAGAAACCTTGAGGGTTTAGCTATCCAAAGTAGTGGTCTTACTGGTTCCATGCCAGAGGATCTTCAAATGGTGAAGAATTTAAAAAAAGTTTTAATTGGTGGATGCAATCTCACTGGGTCTATACCAATATCAATAGGATTATTAACCAATTTAACGTTTCTCAGTTTAGCTGGAAACCAACTTTTTGGCCATATTCCTCATGAAGTTGGATTTCTAAAACAACTCGTAACACTTGATTTGCCTGCTAACCATCTCTCTGGCACAATCCCATCCACAATTGGAAACATGAGCAATTTATCTTTTCTTTACCTTTATGACAACCATCTCAACGGTAGCATTCCTAGTGAAGTTGGAAATTTGATAAATTTAAAATTTATGGGCCTTAACCAAAATAAACTATCTGGACCAATTCCTTCCACTATTGGAAATTTGACAAAACTTAGTACACTTTCTATTTTTTCAAATAACCTCAGTGGCAATATTCCAAAAGAAATGAATAAGATTACCAATTTAGAAAGTTTGCATTTAGCTTATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAATGTTAACCAAGTTCACCGCTAGTGATAATCATTTCACAGGCTTAGTTCCAAAGAGTTTGAAGAATTGCTCCAGTCTTGTGAGAGTTAGGCTTCAAGGCAATCAGCTAACTGACAATATAACAAATAGTTTTGGTGTGTATCCAAATTTGGACTACATGGAATTGAGTGATAATAATTTGTATGGTCATCTATCATCAAATTGGGGAAAGTGCAAGAATCTCACATCCCTTAAAATCTCCAACAACAATTTATCAGGAATCATCCCAAAAGAACTAGGTGGAGCAACTCGGATAACTATACTTAACTTGTCTTCAAACCATCTTATAGGAAACATTCCAAATGACATAGGCAACTTGACTTCATTGATCCAACTCTCGTTAAGTAACAATCACCTTTCAGGAGAAGTTCCTCTTCACATTGCATCACTTCATAAACTATCAGCCTTAGAACTTGCATCAAATAATTTAAGTGGCTTCATCCCAGAACAACTTGGAAGCTTGTCTGGGTTATTTCACTTGAATATGAGCCAAAATAAGTTTCATGGAAACATTCCTCGTGATTTTGGCCATTTAAAAGTTCTTGAAGATCTTGATCTAAGTGGCAATTTTTTGAATGGAACCATACCAGCAATGCTTGGACAATTAAATTGCTTAGAAACATTGAATCTTTCACATAATAATCTTTCTGGTACCATTCCCTTGAGCTCTGGTGAGATGTTAAGCTTGACAACTGTTGATATATCATACAACCGGTTTGAGGGTCCGATTCCAACCATTCCAGCCTTTCAAAAAGCAAATATTGAAGAACTGAGAAACAACAAAGACTTGTGTGGTAATGCCTCTAGCCTAAAGCTTTGTCCATCTAGTGGTAACTCTCATACTCCAAAGACTAACAAGATTTTGGTACTAGTCTTACCCCTCACTCTAGGCACTGTATTGATAGCACTATTTGTTTATGGGTTCTCATATCATCTATGGAGAACTTCAAGAACAAAAGAAAACAATGTTGCTGAAGAATCACACACTGAAAATCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTGTTGAAGCCACAGAAGAGTTTGACAGCAAGCATCTTATTGGGGTTGGAGGACATGGAAGTGTTTTCAAAGCAGAGTTGCCTACAGGACAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGGAGAAGTGTCGAATTTGAAAGCTTTTGCAAGTGAGATCCAAGCATTAACAGAAATCCGACATCGAAACATTGTGAAGTTATATGGATATTGCTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATTTTGAAAGATGATGAACTAGCAACTACATTTGATTGGAAAATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCCTGCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATGCAGAGTATGTTGCTCATATTTCAGACTTTGGAACTGCTAAGTTTCTTAATCCCGATTCTTCCAACCGATCCGGATTTGTGGGCACATTTGGATATGCTGCACCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTTTTAACCATGGAAATACTTTTTGGAAAGCATCCCAGCGGAGACATTGTATCTACTTTGTTGCAATCAAGTGGTATATACCTAACAATTGATGCTTTGTCGGTGAATGATAAGTTGGATCAACGCCTTCCTCGTCCTACGGATGCTATCAGGAAAGAAGTGGTATCAATTATCAGAATTGCATGTCATTGCTTAATTGAAAGCCCACGTAGTCGCCCAACAATGGAACAAGTTTGCAAGGAGATTGTAATGTCAAAGTCATCTTCAAATATAGCAATAATGGGATGA 3345 0.3626 MLQNMKFLPMPCLLLFFCLFLMATPFHAATKVQSSEADALLKWKASLDNNSKALLSSWNIGNKHCNWVGITCDDKSKSIDKVNLANIGLKGTLQSLNFSSLSKVRNLVLSNNSFYGVVPQHIGVMSNLNTLNLSVNNLSGSIPNSVGNLSKLSYLGLSTNHFTGIIPSEITQLVGLYVLSMSHNNDLSGSLPKEISRLRNLTTLDFSSCNLTGTIPISIEKITNLSHLDLGVNNFYGSIPKRIWKMDLKYLAFGTNYFIGSIPQEVFQLRNLEGLAIQSSGLTGSMPEDLQMVKNLKKVLIGGCNLTGSIPISIGLLTNLTFLSLAGNQLFGHIPHEVGFLKQLVTLDLPANHLSGTIPSTIGNMSNLSFLYLYDNHLNGSIPSEVGNLINLKFMGLNQNKLSGPIPSTIGNLTKLSTLSIFSNNLSGNIPKEMNKITNLESLHLAYNNFIGHLPQNICVGGMLTKFTASDNHFTGLVPKSLKNCSSLVRVRLQGNQLTDNITNSFGVYPNLDYMELSDNNLYGHLSSNWGKCKNLTSLKISNNNLSGIIPKELGGATRITILNLSSNHLIGNIPNDIGNLTSLIQLSLSNNHLSGEVPLHIASLHKLSALELASNNLSGFIPEQLGSLSGLFHLNMSQNKFHGNIPRDFGHLKVLEDLDLSGNFLNGTIPAMLGQLNCLETLNLSHNNLSGTIPLSSGEMLSLTTVDISYNRFEGPIPTIPAFQKANIEELRNNKDLCGNASSLKLCPSSGNSHTPKTNKILVLVLPLTLGTVLIALFVYGFSYHLWRTSRTKENNVAEESHTENLFAIWSFDGKMVYENIVEATEEFDSKHLIGVGGHGSVFKAELPTGQVVAVKKLHSLQNGEVSNLKAFASEIQALTEIRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDKILKDDELATTFDWKMRVNAIKDIANALSYMHHDCSPAIVHRDISSKNVVLDAEYVAHISDFGTAKFLNPDSSNRSGFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTMEILFGKHPSGDIVSTLLQSSGIYLTIDALSVNDKLDQRLPRPTDAIRKEVVSIIRIACHCLIESPRSRPTMEQVCKEIVMSKSSSNIAIMG 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01504 1114 SUPERFAMILY Protein kinase-like (PK-like) 812 1100 IPR011009 -
Trre1g01504 1114 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Trre1g01504 1114 Gene3D Ribonuclease Inhibitor 34 187 IPR032675 -
Trre1g01504 1114 Gene3D Ribonuclease Inhibitor 188 247 IPR032675 -
Trre1g01504 1114 Gene3D Transferase(Phosphotransferase) domain 1 908 1111 - -
Trre1g01504 1114 FunFam Leucine-rich repeat receptor protein kinase MSP1 791 907 - -
Trre1g01504 1114 Gene3D Ribonuclease Inhibitor 460 756 IPR032675 -
Trre1g01504 1114 Gene3D Ribonuclease Inhibitor 248 459 IPR032675 -
Trre1g01504 1114 ProSitePatterns Protein kinases ATP-binding region signature. 835 858 IPR017441 GO:0005524
Trre1g01504 1114 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 244 460 - -
Trre1g01504 1114 SMART LRR_typ_2 677 701 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 125 149 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 222 246 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 437 461 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 317 341 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 605 629 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 581 604 IPR003591 -
Trre1g01504 1114 SMART LRR_typ_2 365 389 IPR003591 -
Trre1g01504 1114 ProSitePatterns Tyrosine protein kinases specific active-site signature. 953 965 IPR008266 GO:0004672|GO:0006468
Trre1g01504 1114 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Trre1g01504 1114 Pfam Leucine rich repeat 607 664 IPR001611 GO:0005515
Trre1g01504 1114 SUPERFAMILY L domain-like 35 378 - -
Trre1g01504 1114 PANTHER LEUCINE RICH REPEAT KINASE 2 74 389 - -
Trre1g01504 1114 FunFam MDIS1-interacting receptor like kinase 2 908 1107 - -
Trre1g01504 1114 Pfam Protein kinase domain 831 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01504 1114 ProSiteProfiles Protein kinase domain profile. 829 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01504 1114 Gene3D Phosphorylase Kinase; domain 1 789 907 - -
Trre1g01504 1114 FunFam Nuclear pore complex protein NUP107 33 193 - -
Trre1g01504 1114 FunFam Uncharacterized protein 461 756 - -
Trre1g01504 1114 SUPERFAMILY RNI-like 406 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01504 Trre-Chr1 11400304 11403757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01504 9 1001 Receptor kinase-like Gene Family AT4G08850 40.877 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g01504 Pkinase 7.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01504 - - gmx:100808316 1281.16