Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01498 ATGGCTGGAATAAGAGAACAAGACCAATACATGCCAATAGCAAATGTGATTCGAATAATGCGAAGAATCCTTCCGTCACACGCAAAAATCTCCGATGATGCAAAAGAAACGATTCAAGAATGTGTTTCAGAGTACATAAGCTTCATAACTTCCGAAGCAAACGAGCGTTGCCAAAAAGAACAGCGGAAAACAATTACAGCAGAAGATTTACTTTGGGCTATGGGGAAACTTGGTTTTGATGATTATGTTAATCCTTTAGCATGTTACCTTCAACGTTACCGTGAAAGTGAAGGCGAACCCGCTTCTATTCGACGCACTTCTTCTCATGCTTTGCCTCATCCTTCTCCTCATCCTCTTCCAATGCAGCAGCAGCTTCCATTGTTATCGGCTACGCCGGTTTCGAATGTTGATAGTAGTAATAATTGTTATGGTTTTGGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATGGTGTTGGTGGTGGTGGTGGTGGTGATGCTTCTTCTTCTTCTGCTGCTTTTGTACCGAATTTTGATTATTCTTTTCCTCATCACAAACGTGATAATTATAACATGTGA 582 0.4021 MAGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANERCQKEQRKTITAEDLLWAMGKLGFDDYVNPLACYLQRYRESEGEPASIRRTSSHALPHPSPHPLPMQQQLPLLSATPVSNVDSSNNCYGFGYGFDFDQGFYRDGVGGGGGGDASSSSAAFVPNFDYSFPHHKRDNYNM 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01498 193 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Trre1g01498 193 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Trre1g01498 193 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Trre1g01498 193 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre1g01498 193 MobiDBLite consensus disorder prediction 100 122 - -
Trre1g01498 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Trre1g01498 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre1g01498 193 SUPERFAMILY Histone-fold 7 106 IPR009072 GO:0046982
Trre1g01498 193 FunFam Nuclear transcription factor Y subunit B-6 1 113 - -
Trre1g01498 193 Gene3D Histone, subunit A 2 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01498 Trre-Chr1 11356455 11357036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01498 5 124 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.667 4.49e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre1g01498 CBFD_NFYB_HMF 4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01498 K08065 - gmx:100811633 202.216