Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01486 ATGTCTTTGGCATCCAAGGCTCTTCCTGCTCTTCATCCTATCAAATCTTTACCTCCTGGTTTCAAGGTTAATGGTAATCTGACCCGTGATCTAATGGAAAGCCGGGGAGATGCTAAATTGAGAAACAGTGATTTGGTTGGATCAAGTAGTCCTGAAAATGATGCTCTGATCGGAGATGTTTCTGAAGAATCTCAAGATCGTGCAGGTGGCACGAGTCTTTTCAATGAAGATATAGCGTATAGTGGAAAAGCTGTATCATTCGAAGACAGGGCATCTATTGGTGATGAAGACTTGGAATCTGTTCCTCTTCCCTTCCAAACAATTTCAGTGTCCTCTAGGGAATCAAGGTGGAGTGATACAACACCTTGTGTTTCAAAGAAGAAAATTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGCAAAGATAATAACAACTTCTGGAACAGAATCAGTTATTTCATTGCCTGATGGGAAGGTTTTAAAAGTCAAACAAGACAGTTTGGTATCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTGAATGAACCATCAGTTTTATACGATCTACAATATAGATACAATCAAAATATGATTTATACAAAAGCGGGGCCCGTTTTGGTTGCTATAAATCCTTTCAAGAAAGTTCCTCTGTATGGTAACAATTATATTGAAGCCTACAAGCGTAAAGCAACTGAAAGCCCTCATGTATATGCAATTACAGATAGAGCCATCCGAGAAATGATACGAGATGAAGTAAATCAATCTATAATTATAAGTGGTGAGAGTGGAGCTGGGAAGACCGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCTCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTGAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACTTTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTTATTGAGATTCACTTCAGTGAAACTGGAAAAATTTCTGGTGCTAATATTCAAACATGTAGGTTTTCTGCTTCTAGAGTAGTTCAATGCAACGAAGGGGAAAGGTCGTATCATATATTTTATCAGCTATGTGCTGGTGCACCACCATCTCTTCGGGAGAAGCTCAACCTACAAAATGCAGAAGATTATAAATATTTGAAGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGCATAGTCATGGAAGCTCTTGATGTTGTCCACATCAGTAAAGAAGACCAGGAGACTGTATTTGCCATGCTTGCTGCAGTATTATGGTTAGGGAACATATCGTTTACTGTCATTGATAATGAAAACCATGTTCAAGCTGTTGAAAATGAGGGTTTGTTACACGTCGCCGAATTGATTGGCTGTGACGTTGAAGATCTCAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGCAATGATAATATCATCCAAAAGTTGACACAATCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAGTCTATATATGCATGCCTGTTTGATTGGTTGATTGAACAAATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGAAGATCAATCAGTATTCTAGATATATATGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAATCAAGACTGCCTTAATCTTTTTGAGAAGAGACCACTGGGGTTATTATCCCTTCTAGATGAAGAGTCCACTTTCCCAAATGGCAGCGATTTGACATTTGCCAACAAGCTTAAACAACATTTAAATTCTAAATCATGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTCTGTCATTATGCTGGAGAGGTCACTTATGATACAACTGGATTTCTGGAGAAGAATAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCATGCACATGTCATCTTCCTCAAATATTTGCATCTCATATGCTTACACAGTCTGAAAAGCCAGTAGTTGGTCCTTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAGTTGTTCCAACTGATGCAACGCTTAGAGAGTACAACTCCACATTTTATTCGCTGCATTAAGCCCAACAATCTCCAATCACCTGAATCATATGAACAAGGGCTTGTACTGCAACAGCTTAGATGCTGTGGGGTGCTGGAAGTGGTTCGAATATCAAGATCCGGCTTTCCAACAAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGCTTTCTTCTCTTTGATAATGCGGCATCTCAGGATCCACTTGGTGTTTCAGTTTCAATTCTTCATCAATTTAATATTTTGCCCGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGAACAGGACAGATTGGTGTGCTTGAAGATACTAGAAACCGTACTCTTCATGGCATCTTACGTGTCCAAAGTTGCTTTAGGGGTTACCAAGCTCGTCATTCTCTCAAGAAGCTTCAAGGAGGAATCTCAACTTTGCAGTCATTTATTCGGGGAGATAAAACAAGAAAGGCATATGCTGCTTTGCTTCAGAGACATAGAGCTGCAGTTATTATACAGAAACAGATAAAAGCAGTGTTCGTAAGAAACAAAACCAGGACTATTAGAGATGCTACAATTGTCGTACAATCAGTCATTCGTGGATGGTTGGTCAGAAGATGCTCAGGGGATATTGGATATTTGAAAGATGGAAACATGAAGACAAAAGAGTCAGATGAGATTTTGGTCAAGTCATCATTCCTGGCTGAATTGCAGCGCCGGGTACTAAAGGCTGAAGCTGCCCTGAGAGAGAAAGATGAGGAAAATGACATCCTTAACCAACGTATCCAACAATATGAAAGCAGATGGTCTGAATATGAGTTGAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTTCAATCTAGCCTCTCCATTGCTAAGAAGAGCCTTGCTATTGATGACTCCGAAAGAAATTCAGATGCATCTGTTAATGCAAGCGATGAGCGTGATTACAGCTGGGATGTGGGAAGTAATCACAGGCGTCAAGAAAGCAATGGGACACGATCAACGAGTGCTAGTTTGAGTGTTATAAGTCGGCTTACTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTGAAATCTGGTCAAGTAGAAGCAAGTCTAAACCCGGATCAAGAACTTAGAAGGTTAAAACAAATGTTTGAAGCTTGGAAAAGGGACTACTCAGGAAGATTGCGCGAAACAAAATTGATTATAAATAAACTTGGAACTGAAGATGGTGCACTTGAGAAAATGAGGAAAAAGTGGTGGGGGAGAAGGAATAGTACAAGGATAAATTGA 3531 0.3951 MSLASKALPALHPIKSLPPGFKVNGNLTRDLMESRGDAKLRNSDLVGSSSPENDALIGDVSEESQDRAGGTSLFNEDIAYSGKAVSFEDRASIGDEDLESVPLPFQTISVSSRESRWSDTTPCVSKKKIQSWFQLPNGNWELAKIITTSGTESVISLPDGKVLKVKQDSLVSANPDILDGVDDLMQLSYLNEPSVLYDLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNNYIEAYKRKATESPHVYAITDRAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCRFSASRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQNAEDYKYLKQSNCYSITGVNDAEEFRIVMEALDVVHISKEDQETVFAMLAAVLWLGNISFTVIDNENHVQAVENEGLLHVAELIGCDVEDLKLTLSTRKMKVGNDNIIQKLTQSQAIDARDALAKSIYACLFDWLIEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGSDLTFANKLKQHLNSKSCFKGERDQAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLFDNAASQDPLGVSVSILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARHSLKKLQGGISTLQSFIRGDKTRKAYAALLQRHRAAVIIQKQIKAVFVRNKTRTIRDATIVVQSVIRGWLVRRCSGDIGYLKDGNMKTKESDEILVKSSFLAELQRRVLKAEAALREKDEENDILNQRIQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDYSWDVGSNHRRQESNGTRSTSASLSVISRLTEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKRDYSGRLRETKLIINKLGTEDGALEKMRKKWWGRRNSTRIN 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01486 1176 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Trre1g01486 1176 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 FunFam Myosin heavy chain 361 417 - -
Trre1g01486 1176 Pfam IQ calmodulin-binding motif 926 943 IPR000048 GO:0005515
Trre1g01486 1176 Pfam IQ calmodulin-binding motif 857 873 IPR000048 GO:0005515
Trre1g01486 1176 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 Gene3D - 784 852 - -
Trre1g01486 1176 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 FunFam Unconventional myosin-XIX 549 741 - -
Trre1g01486 1176 Gene3D - 855 903 - -
Trre1g01486 1176 Gene3D - 904 945 - -
Trre1g01486 1176 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 Gene3D Kinesin motor domain 182 780 IPR036961 -
Trre1g01486 1176 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Trre1g01486 1176 MobiDBLite consensus disorder prediction 1066 1080 - -
Trre1g01486 1176 SMART iq_5 901 923 IPR000048 GO:0005515
Trre1g01486 1176 SMART iq_5 924 946 IPR000048 GO:0005515
Trre1g01486 1176 SMART iq_5 852 874 IPR000048 GO:0005515
Trre1g01486 1176 SMART iq_5 875 897 IPR000048 GO:0005515
Trre1g01486 1176 Coils Coil 971 1019 - -
Trre1g01486 1176 Gene3D - 547 741 - -
Trre1g01486 1176 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Trre1g01486 1176 MobiDBLite consensus disorder prediction 40 72 - -
Trre1g01486 1176 MobiDBLite consensus disorder prediction 1044 1080 - -
Trre1g01486 1176 PANTHER MYOSIN 173 1166 - -
Trre1g01486 1176 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01486 1176 ProSiteProfiles IQ motif profile. 876 905 IPR000048 GO:0005515
Trre1g01486 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 899 IPR027417 -
Trre1g01486 1176 CDD MYSc_Myo8 193 839 IPR036022 -
Trre1g01486 1176 Gene3D - 361 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01486 Trre-Chr1 11267672 11280071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01486 3 1174 Myosins gene family AT1G50360 72.828 0.0 1763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01486 - K10357 gmx:100781736 2095.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01486 1 11267672 11280071 Trre1g01486 1 11267672 11280071 ECH