Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01482 ATGTCTAACTGCAAGGAAACAACAACTACTGCAACTATAACTAACGCCGTCGAAACCACAAACCAAACCGTTAAAAAACCGCCGTCAAAAGACCGTCACAGCAAAGTTGACGGACGTGGAAGAAGAATACGTATGCCAATAATATGCGCCGCACGTGTTTTCCAGTTAACACGTGAGTTAGGTCATAAATCCGACGGTCAAACTATTGAATGGCTTCTCCGACAAGCTGAACCGTCGATTATCGCCGCTACCGGTACCGGAACTACTCCTGCTTCATTCTCTTCTCTTTCTGAACATAAACCTTTTCTTCCTCCTTCTCCTTTCATTCTCGGTAAACGTTTAAGGTCTGAACATGATGAAGCTGTTTCGATTGCTGCACCTACTGCTCCGCCTGGTATATGGCGGCCGGATTTTGCTCAGCTTTGGAGTTTTGCTGCTGCTCAACCTCCTCCTGAAGTTCTTTCAATTTCACCTCATCAGCATCAGCAACAACATCAGCATAATTCGCTGTTTCATCATCAACAACAACAGCAGAATCAGCACCAGCATCAACATCAACAGCAAGGTTCTATGGGAGAAGCTTCGGCGGCGAGGTTAGGGAATTATCTTCCTGGACATTTGAATTTGCTTGCTTCGTTGTCTGGTGGTAATGGTAATTCCGGCCGAGGAGATGACGAGGATCGTTGA 687 0.46 MSNCKETTTTATITNAVETTNQTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFLPPSPFILGKRLRSEHDEAVSIAAPTAPPGIWRPDFAQLWSFAAAQPPPEVLSISPHQHQQQHQHNSLFHHQQQQQNQHQHQHQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGRGDDEDR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01482 228 MobiDBLite consensus disorder prediction 25 41 - -
Trre1g01482 228 MobiDBLite consensus disorder prediction 152 194 - -
Trre1g01482 228 Pfam TCP family transcription factor 29 187 IPR017887 -
Trre1g01482 228 MobiDBLite consensus disorder prediction 155 194 - -
Trre1g01482 228 ProSiteProfiles TCP domain profile. 29 83 IPR017887 -
Trre1g01482 228 MobiDBLite consensus disorder prediction 21 41 - -
Trre1g01482 228 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 185 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01482 Trre-Chr1 11240611 11241297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01482 23 228 TCP Transcription Factor Family AT5G23280 60.256 7.59e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre1g01482 TCP 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01482 K16221 - gmx:100786264 244.973