Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01475 ATGGACCAAATCATTGAAAAGTACCAGAGATCTAGTGGTAAACGAATTATGGTGGAACATGATGATCATCATATTAATCACCAAAGGGAGGAAATGTTGAATGACATGACAATGTTGAGGCAAGAAAATCATCGTATTGAATTGGGAATTCAACACTATTTAGGAGCTGGCATGAACGGTTTCAAGTTTGATGATCTGATTAAACTTGAAGAAGAATTAGAAATTTCTCTTGCAAAAGTTCGAAACCGTCAGATTGAGCTCTTGCAGCAGCAAATCCAGAATCTGCGAATCAAGGAAAGAATCTTGGAAGAGGAAAACATCAATTTGTCCAACTGGGAGCACATGAGAGTGATGGAATTTCACAATGCTGGAATGGAAGGGAAAAAATTGGGGCAACAACAACAACATCAAAATGCAATGGATGAGTTTGCATTCTTTGAGAACCAACCTACTAGTAACATTCTTCAACTTGCTCTTGCTCAACCAAATCTTCAAGACTATCTCAAGGCTAGGGACCCAGATCAGCCATAA 531 0.3861 MDQIIEKYQRSSGKRIMVEHDDHHINHQREEMLNDMTMLRQENHRIELGIQHYLGAGMNGFKFDDLIKLEEELEISLAKVRNRQIELLQQQIQNLRIKERILEEENINLSNWEHMRVMEFHNAGMEGKKLGQQQQHQNAMDEFAFFENQPTSNILQLALAQPNLQDYLKARDPDQP 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01475 176 Coils Coil 78 105 - -
Trre1g01475 176 ProSiteProfiles K-box domain profile. 29 123 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre1g01475 176 Pfam K-box region 27 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01475 Trre-Chr1 11176861 11178178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01475 1 166 MADS-box Gene Family AT5G23260 34.375 5.02e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01475 - - gmx:102667157 136.346