Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01473 ATGAAGGAAAAACTATCCTTTTCTCTCCCTTCATCAAAATCTTCATCCAAATCCAACAATTCCGTTAAACCCTCTCAAAATTTCCACCATGATTCTTCCACAGATCAACAACAACAAAAACAATTAATCACCGAATTCGATCCTTCAAAACCTCAAATCCTAAACCCAAATCCCAAAACCCTAATTGCCCCAATCGAAAATCAATGGCGTCCACACAAAAAAATGAAGAATCTCGATCTCCCCATCACCGATTCACACTCTTCCCATTCCCTAACCTTCGAACAAGACACATCTTCAATCTCCGATCAACCTGCTGACAAATCATCCTATGGTCTCAACCTTCGTTCCACCGACAACAACAACAACAAACAGCAATCCGATGTTGTTGATGAGCAGCCACGGCCACGTGCTTCTGTGGAGGTTTCTATGCTTCAGAAATTCAAGGAAGACATGGAGAAACTTCCGGCCGATCAAGGTTTTGATGAGTATATAGACGTTCCTGTTGATGGATTCGGTGCAGCGCTTCTTGGTGGTTATGGATGGAAAGAAGGAATGGGGATTGGGAAAAATGCTAAGGAGGATATTAAGGTTGTTCAGGTTAAGAGGAGGACTGCTAAGGAAGGTTTGGGTTTTGTTGCTGATATGCCTCCTCCTACGTCGAAGAAAGGTGAAAGGAACGGAAAGTTGGAGAGTGAGAAGAGGAAGAAGGAGAGGGTTGTTAGGATTGTTAGAGGTAGAGATGTTGGATTGAAGGCTAGTGTTGTAGGTAGAATTGGGGATGATGTTCTTGTTTTGAATATTTTAGGGAGTGGTGATAAAGTTGAGGTTAAGGTAGATGATGTTGCTGATTTGGGTTCTGTTGAGGAAGATAGATGTTTGAGTAAGTTGAAGGATGTGAAGATTCGTGGGAGGGATGAGGAAAAAGGGTCCAGGAGTAAGCGTGACGAGGAAAAAGGGTCCAGGAGGAGTAAGCGTGACGAGGAAAAAGAGTCTCGAAGTAATCGTGGGAGGGATGAGGTTGAAGAGAGGAGAGTGAATTCTAATGGTGGGGATAAGGAAGAGAAGGGGAAGAAACAAGTTTCTTGGCTTACAAGTCATATTCGGGTTAGAGTGGTTAGTAGAAGTTTTAAAGGGGGGAGATTTTATTTGAAGAAAGGAGAGGTTTTGGATGTTATTGGGCCTACTACTTGTGATATATCTATGGATGAGAGTAGGGAGATTATTCAAGGGGTGTCGCAAGATATGCTAGAGACAGCTATTCCACGACGAGGTGGACCTGTTCTTGTGTTGTCTGGTAAACATAAAGGTGCTTTTGGGAGTCTTGTTGAGAGGGATTTGGATAGGGAGATTGGTATAGTTAGGGATGCTGATACCCATGAGATGCTCAGTGTCAAACTTGAACATATGGCAGATGTAGAACTTCCATATGTAGAAACAAATTTACAAATTTGA 1452 0.4256 MKEKLSFSLPSSKSSSKSNNSVKPSQNFHHDSSTDQQQQKQLITEFDPSKPQILNPNPKTLIAPIENQWRPHKKMKNLDLPITDSHSSHSLTFEQDTSSISDQPADKSSYGLNLRSTDNNNNKQQSDVVDEQPRPRASVEVSMLQKFKEDMEKLPADQGFDEYIDVPVDGFGAALLGGYGWKEGMGIGKNAKEDIKVVQVKRRTAKEGLGFVADMPPPTSKKGERNGKLESEKRKKERVVRIVRGRDVGLKASVVGRIGDDVLVLNILGSGDKVEVKVDDVADLGSVEEDRCLSKLKDVKIRGRDEEKGSRSKRDEEKGSRRSKRDEEKESRSNRGRDEVEERRVNSNGGDKEEKGKKQVSWLTSHIRVRVVSRSFKGGRFYLKKGEVLDVIGPTTCDISMDESREIIQGVSQDMLETAIPRRGGPVLVLSGKHKGAFGSLVERDLDREIGIVRDADTHEMLSVKLEHMADVELPYVETNLQI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01473 483 MobiDBLite consensus disorder prediction 210 236 - -
Trre1g01473 483 SMART kow_9 420 447 IPR005824 -
Trre1g01473 483 SMART kow_9 233 260 IPR005824 -
Trre1g01473 483 MobiDBLite consensus disorder prediction 81 128 - -
Trre1g01473 483 PANTHER G PATCH AND KOW-CONTAINING 1 471 IPR045166 GO:0000398
Trre1g01473 483 ProSiteProfiles G-patch domain profile. 168 214 IPR000467 GO:0003676
Trre1g01473 483 MobiDBLite consensus disorder prediction 221 236 - -
Trre1g01473 483 Pfam G-patch domain 155 213 IPR026822 -
Trre1g01473 483 MobiDBLite consensus disorder prediction 7 56 - -
Trre1g01473 483 Gene3D - 366 420 - -
Trre1g01473 483 SMART G-patch_5 166 212 IPR000467 GO:0003676
Trre1g01473 483 MobiDBLite consensus disorder prediction 1 137 - -
Trre1g01473 483 MobiDBLite consensus disorder prediction 303 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01473 Trre-Chr1 11154892 11157364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01473 362 448 C2H2 Transcription Factor Family AT1G55460 32.184 1.40e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01473 K13101 - gmx:100784983 460.299