Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01471 ATGGTTGATAAAAGTTTAATTACTCGCGAATCGAGTAAATTTGATTCGGTCGATCTAAATTGGACTAACCTGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTAGTTTATTTACAGAAAATTGCTCTTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTACTGCCACTAATCCTGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTAAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGAAAATATACTTATCATGAATTTGAAGCTATGGCAAACAAAGCCTTTTCGAATAAATTTTGCAGTTCGGAAGATCTTTCTTCTTTGGATATCGAAAAAGCGTTCTGGAACGAAATGATACATGGAGAGAAGGGTTCAGTTGAGTATGGAGTCAACATTGAGGGAAGTGTTTTTTCATGTGATCCTGATGATAAGCTTGGAACAAGCAAATTAAATTTGAAGAATTTAGCGCGACTGCCGCAGTCTACATTGCGTTTAGTTGACAGAGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTATGCAGCCTCTCAATTTGAAAAGACTGTGTTGAATCATGTGTATTGCAACAAAGTCTTGCAAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAAGCATGTTCCCGCCGAATATCTTGTTACAACATGATGCTCCGGTTTACAAGGCCGTGCAGAAGCCAGGAGAGTTTGTGGTCACCTTTCCTAGATCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCAGTAAACTTTGCTATTTGTGATTGGTTTCCACTCGGGGCTGCAGCTAGCAAACGTTATGCATATCTCAGAATGCTACCGATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTAATATACAAGTCTTCAAAAGTCACTAGTTTCAAGAACAAACCTGAAGACAACACATCTTATCGTGCAATTATACTATCGTTCTTGCAGCTTATGCAATTTTATAAGACATCGCTATCGCGGTTGAGCAGTTCAAGAAATTCAACAAGCTCCTCAAATACATTTGGTTCTCTTACATGCAGCATCTGCCATAGGGATTGCTATGTAGCTTACTTGTTGTGCAAGAAATGTTATTCCTATCCAATTTGTTTTTTCCATGACATTGTGCCGCAAACCTGCTTATGTGGGAGAAAATATACCGTTTTTACAAGGAATGACATGTTGGAACTCGAACATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATTGACGCGTTATCTTTAACAAGTATATTCTCATATAACATAAATGAATGCATCAAAGATCTCAAGGACAATAATTGGCATGAAGAAAAAAGTGCTAGAAGAACTTTTAACTCTTTAGCGGCACATCGAAGAAAAGTTGCGGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGAAGACAAAGAATCATCATAGAAACAATCCGCATCCACCATCGGTGATGAGTAACAAAAGACCACGAATCCTTTATAACTCGAGAAAACATGATCCAAAATTGATCATAAAAGTTCCTGCAGTATCTTCTCTTTCGGCGACATCTGAAAAATCAAAGTAA 1797 0.3689 MVDKSLITRESSKFDSVDLNWTNLIPECPIYHPSEQEFEHPLVYLQKIALEASKYGICKIVSPITATNPADYVLMKEKKDLKFETIVQPLRLSKWNEKDMITFSKRGRKYTYHEFEAMANKAFSNKFCSSEDLSSLDIEKAFWNEMIHGEKGSVEYGVNIEGSVFSCDPDDKLGTSKLNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTVLNHVYCNKVLQEHGENGAFQFLAQKTSMFPPNILLQHDAPVYKAVQKPGEFVVTFPRSYHAGFSHGFNCGEAVNFAICDWFPLGAAASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVTSFKNKPEDNTSYRAIILSFLQLMQFYKTSLSRLSSSRNSTSSSNTFGSLTCSICHRDCYVAYLLCKKCYSYPICFFHDIVPQTCLCGRKYTVFTRNDMLELEHAAKSFQQEKECIDALSLTSIFSYNINECIKDLKDNNWHEEKSARRTFNSLAAHRRKVADNIKHNVEKNKKKTKNHHRNNPHPPSVMSNKRPRILYNSRKHDPKLIIKVPAVSSLSATSEKSK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01471 598 SMART JmjN_1 27 68 IPR003349 -
Trre1g01471 598 Pfam JmjC domain, hydroxylase 205 328 IPR003347 -
Trre1g01471 598 Gene3D Cupin 28 389 - -
Trre1g01471 598 SMART cupin_9 175 345 IPR003347 -
Trre1g01471 598 SUPERFAMILY Clavaminate synthase-like 180 363 - -
Trre1g01471 598 MobiDBLite consensus disorder prediction 534 566 - -
Trre1g01471 598 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 556 - -
Trre1g01471 598 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Trre1g01471 598 ProSiteProfiles JmjC domain profile. 175 345 IPR003347 -
Trre1g01471 598 Pfam jmjN domain 29 61 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01471 Trre-Chr1 11143080 11146012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01471 25 490 JUMONJI Transcription Factor Family AT2G34880 30.741 2.59e-58 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g01471 JmjC 3.3e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01471 - - cam:101502558 907.516