Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01470 ATGGGAGCAACAAATGTTGTCAAATGCAAAAGAAGAAGAATGGTTGATAAAAGTTTAATTACTCGCGAATCGAGTAAATTTGATTCGGTCGATCTAAATTGGACTAACCTGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTAGTTTATTTACAGAAAATTGCTCTTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTACTGCCACTAATCCTGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTAAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGTTCGGAAGATCTTTCTTCTTTGGATATCGAAAAAGCGTTCTGGAACGAAATGATACATGGAGAGAAGGGTTCAGTTGAGTATGGAGTCAACATTGAGGGAAGTGTTTTTTCATGTGATCCTGATGATAAGCTTGGAACAAGCAAATTAAATTTGAAGAATTTAGCGCGACTGCCGCAGTCTACATTGCGTTTAGTTGACAGAGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTATGCAGCCTCTCAATTTGAAAAGACTGTGTTGAATCATGTGTATTGCAACAAAGTCTTGCAAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAAGCATGTTCCCGCCGAATATCTTGTTACAACATGATGCTCCGGTTTACAAGGCCGTGCAGAAGCCAGGAGAGTTTGTGGTCACCTTTCCTAGATCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCAGTAAACTTTGCTATTTGTGATTGGTTTCCACTCGGGGCTGCAGCTAGCAAACGTTATGCATATCTCAGAATGCTACCGATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTAATATACAAGTCTTCAAAAGTCACTAGTTTCAAGAACAAACCTGAAGACAACACATCTTATCGTGCAATTATACTATCGTTCTTGCAGCTTATGCAATTTTATAAGACATCGCTATCGCGGTTGAGCAGTTCAAGAAATTCAACAAGCTCCTCAAATACATTTGGTTCTCTTACATGCAGCATCTGCCATAGGGATTGCTATGTAGCTTACTTGTTGTGCAAGAAATGTTATTCCTATCCAATTTGTTTTTTCCATGACATTGTGCCGCAAACCTGCTTATGTGGGAGAAAATATACCGTTTTTACAAGGAATGACATGTTGGAACTCGAACATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATTGACGCGTTATCTTTAACAAGTATATTCTCATATAACATAAATGAATGCATCAAAGATCTCAAGGACAATAATTGGCATGAAGAAAAAAGTGCTAGAAGAACTTTTAACTCTTTAGCGGCACATCGAAGAAAAGTTGCGGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGAAGACAAAGAATCATCATAGAAACAATCCGCATCCACCATCGGTGATGAGTAACAAAAGACCACGAATCCTTTATAACTCGAGAAAACATGATCCAAAATTGATCATAAAAGTTCCTGCAGTATCTTCTCTTTCGGCGACATCTGAAAAATCAAAGTAA 1773 0.3717 MGATNVVKCKRRRMVDKSLITRESSKFDSVDLNWTNLIPECPIYHPSEQEFEHPLVYLQKIALEASKYGICKIVSPITATNPADYVLMKEKKDLKFETIVQPLRLSKWNEKDMITFSKRGSSEDLSSLDIEKAFWNEMIHGEKGSVEYGVNIEGSVFSCDPDDKLGTSKLNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTVLNHVYCNKVLQEHGENGAFQFLAQKTSMFPPNILLQHDAPVYKAVQKPGEFVVTFPRSYHAGFSHGFNCGEAVNFAICDWFPLGAAASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVTSFKNKPEDNTSYRAIILSFLQLMQFYKTSLSRLSSSRNSTSSSNTFGSLTCSICHRDCYVAYLLCKKCYSYPICFFHDIVPQTCLCGRKYTVFTRNDMLELEHAAKSFQQEKECIDALSLTSIFSYNINECIKDLKDNNWHEEKSARRTFNSLAAHRRKVADNIKHNVEKNKKKTKNHHRNNPHPPSVMSNKRPRILYNSRKHDPKLIIKVPAVSSLSATSEKSK 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01470 590 Gene3D Cupin 41 381 - -
Trre1g01470 590 PANTHER LYSINE-SPECIFIC DEMETHYLASE 36 548 - -
Trre1g01470 590 SMART JmjN_1 40 81 IPR003349 -
Trre1g01470 590 MobiDBLite consensus disorder prediction 526 558 - -
Trre1g01470 590 SMART cupin_9 167 337 IPR003347 -
Trre1g01470 590 Pfam JmjC domain, hydroxylase 197 320 IPR003347 -
Trre1g01470 590 Pfam jmjN domain 42 74 IPR003349 -
Trre1g01470 590 ProSiteProfiles JmjC domain profile. 167 337 IPR003347 -
Trre1g01470 590 ProSiteProfiles JmjN domain profile. 41 82 IPR003349 -
Trre1g01470 590 SUPERFAMILY Clavaminate synthase-like 178 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01470 Trre-Chr1 11143041 11146012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01470 164 351 C2H2 Transcription Factor Family AT5G04240 47.872 8.47e-53 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g01470 JmjC 3.2e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01470 - - cam:101502558 873.618