Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01469 ATGGGAGCAACAAATGTTGTCAAATGCAAAAGAAGAAGAATGGTTGATAAAAGTTTAATTACTCGCGAATCGAGTAAATTTGATTCGGTCGATCTAAATTGGACTAACCTGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTAGTTTATTTACAGAAAATTGCTCTTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTACTGCCACTAATCCTGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTAAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGAAAATATACTTATCATGAATTTGAAGCTATGGCAAACAAAGCCTTTTCGAATAAATTTTGCAGTTCGGAAGATCTTTCTTCTTTGGATATCGAAAAAGCGTTCTGGAACGAAATGATACATGGAGAGAAGGGTTCAGTTGAGTATGGAGTCAACATTGAGGGAAGTGTTTTTTCATGTGATCCTGATGATAAGCTTGGAACAAGCAAATTAAATTTGAAGAATTTAGCGCGACTGCCGCAGTCTACATTGCGTTTAGTTGACAGAGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTATGCAGCCTCTCAATTTGAAAAGACTGTGTTGAATCATGTGTATTGCAACAAAGTCTTGCAAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAAGCATGTTCCCGCCGAATATCTTGTTACAACATGATGCTCCGGTTTACAAGGCCGTGCAGAAGCCAGGAGAGTTTGTGGTCACCTTTCCTAGATCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCAGTAAACTTTGCTATTTGTGATTGGTTTCCACTCGGGGCTGCAGCTAGCAAACGTTATGCATATCTCAGAATGCTACCGATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTAATATACAAGTCTTCAAAAGTCACTAGTTTCAAGAACAAACCTGAAGACAACACATCTTATCGTGCAATTATACTATCGTTCTTGCAGCTTATGCAATTTTATAAGACATCGCTATCGCGGTTGAGCAGTTCAAGAAATTCAACAAGCTCCTCAAATACATTTGGTTCTCTTACATGCAGCATCTGCCATAGGGATTGCTATGTAGCTTACTTGTTGTGCAAGAAATGTTATTCCTATCCAATTTGTTTTTTCCATGACATTGTGCCGCAAACCTGCTTATGTGGGAGAAAATATACCGTTTTTACAAGGAATGACATGTTGGAACTCGAACATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATTGACGCGTTATCTTTAACAAGTATATTCTCATATAACATAAATGAATGCATCAAAGATCTCAAGGACAATAATTGGCATGAAGAAAAAAGTGCTAGAAGAACTTTTAACTCTTTAGCGGCACATCGAAGAAAAGTTGCGGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGAAGACAAAGAATCATCATAGAAACAATCCGCATCCACCATCGGTGATGAGTAACAAAAGACCACGAATCCTTTATAACTCGAGAAAACATGATCCAAAATTGATCATAAAAGTTCCTGCAGTATCTTCTCTTTCGGCGACATCTGAAAAATCAAAGTAA 1836 0.3687 MGATNVVKCKRRRMVDKSLITRESSKFDSVDLNWTNLIPECPIYHPSEQEFEHPLVYLQKIALEASKYGICKIVSPITATNPADYVLMKEKKDLKFETIVQPLRLSKWNEKDMITFSKRGRKYTYHEFEAMANKAFSNKFCSSEDLSSLDIEKAFWNEMIHGEKGSVEYGVNIEGSVFSCDPDDKLGTSKLNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTVLNHVYCNKVLQEHGENGAFQFLAQKTSMFPPNILLQHDAPVYKAVQKPGEFVVTFPRSYHAGFSHGFNCGEAVNFAICDWFPLGAAASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVTSFKNKPEDNTSYRAIILSFLQLMQFYKTSLSRLSSSRNSTSSSNTFGSLTCSICHRDCYVAYLLCKKCYSYPICFFHDIVPQTCLCGRKYTVFTRNDMLELEHAAKSFQQEKECIDALSLTSIFSYNINECIKDLKDNNWHEEKSARRTFNSLAAHRRKVADNIKHNVEKNKKKTKNHHRNNPHPPSVMSNKRPRILYNSRKHDPKLIIKVPAVSSLSATSEKSK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01469 611 ProSiteProfiles JmjC domain profile. 188 358 IPR003347 -
Trre1g01469 611 PANTHER LYSINE-SPECIFIC DEMETHYLASE 36 569 - -
Trre1g01469 611 SMART JmjN_1 40 81 IPR003349 -
Trre1g01469 611 Pfam jmjN domain 42 74 IPR003349 -
Trre1g01469 611 SUPERFAMILY Clavaminate synthase-like 193 376 - -
Trre1g01469 611 SMART cupin_9 188 358 IPR003347 -
Trre1g01469 611 Pfam JmjC domain, hydroxylase 218 341 IPR003347 -
Trre1g01469 611 Gene3D Cupin 41 402 - -
Trre1g01469 611 MobiDBLite consensus disorder prediction 547 579 - -
Trre1g01469 611 ProSiteProfiles JmjN domain profile. 41 82 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01469 Trre-Chr1 11143041 11146012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01469 38 503 JUMONJI Transcription Factor Family AT2G34880 30.741 3.28e-58 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g01469 JmjC 3.4e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01469 - - cam:101502558 928.317