Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01459 ATGGATTTTCACATTCCCTATGATCATTCTTATATCATGACCAAAAACTACTATTTCAATTTCAACCTCACATCATCTTCATTCTACACTTCAAGCATGGTTTCAACCATAGTAAACTTGTTTTCTCACATCCTCTCACTTTTAAAAAATATTCAACTCATTGAGATTATTATTGCATCCATAGTTTTCATAATAATTCATTCCTTGAGATCCAAGAAAGATCATGGCCTAATCAATTGGCCTATCTTTGGAATGTTACCTTCATTAATCATTGGACTCAAAACCAGTAACATGTATGAAAGACTAACTGATATACTTATATATCAAAATGGAACCTTTAGATTCAAAGGACCCTGGTTCACTAGTCTCAATTGTATAGTAACCTCGGAACCGCAAAATGTAGAACATCTTCTCAAAACAAGGTTTACTAATTTCCCTAAAGGAAATTGTGTTAAAGACACAGTTTCTGATTTACTAGGAGACGGTATTTTCGCTGCAGATAATGAAACATGGCAGAAACAAAGAAAAACAGCGAGTATCGAGTTTCATTCAACAAAGTTTCGGAAATTAACAATTGAGTCATTGTTTGAGCTTGTGAATAATAGGCTCATACCTGTCTTAGATTCGTCTTTTAAGAAATCGGTTTCGATTGATCTTCAAGATATTTTGTTGAGATTAACTTTTGATAATGTTTGTATGATTGCTTTCGGTGTTGATCCTGGTTGTTTACAACCTCATTTACCTGTAATACCTTTTGCAGCAGCTTTTGAAGATGCAACAGAAGCTATTTTGCTTCGATTTCCGACGCTGGCTTGTGTATGGAAAACTATGAGGTTTCTTAACTTAGGTATAGAAAGAAAGTTGAAGAAATCAATACAAAAAGTTGATGAATTTGCTGATAATGTCATAAGTGAAAGAAAGAAAGAACTATCTTTGGAAAATGAACATGATGTTGATGATGATACGCGAAAATCGGATTTGTTAACTGTGTTTATGAGGCTTAAAGATGAGAATGGAATGGCTTATTCAGATAAGTTCTTGAGGGATATTTGTGTGAATTTTATATTAGCTGGGAGAGATACTTCTTCTGTTGCTTTAAGCTGGTTTTTCTGGTTAATTGATCAGAATCATGAAGTGGAGGAGAGAATATTAGAAGAGATTTGTAGGGTTGTGAGTGAGAGAGAGGAGATTAATAAGAAGGAAGAATTTGATAATAATTGTTTGAGATTCATGCCTGAGGAGATTAAGAAAATGGATTATTTGCACGCTGCTCTTTCAGAAGCTCTTAGATTGTATCCTTCTGTGCCTATGGATCATAAGGAGGTGGTAGAAGATGATAAATTTCCAGATGGAACAGAACTAAAGAAAGGAACAAAAGTGATATATGCAATATATTCAATGGGAAGAATGGAAAGCATATGGGGAAAAGATTGCTTGGAGTTCAAGCCAGAAAGATGGTTAACTAAAGAAGGTAATTTCATAAGTGAATCTGCATACAAATTCACTGCTTTTAATGGAGGACCAAGATTGTGTTTAGGCAAAGATTTTGCATACTATCAAATGAAATATGTTGCAGCAAGTGTTATATTTCATTACCATGTTAAGGTTGTTGAGAATCACCCTATTGTTCCTAAGCTTTCTTTGACACTTTACATGAAGCATGGATTGAAAGTTAATCTTCATAGGCGTTGTGGTGAAGAGGTTGGTAAATATTTGAAGTTTAGTTAG 1728 0.3403 MDFHIPYDHSYIMTKNYYFNFNLTSSSFYTSSMVSTIVNLFSHILSLLKNIQLIEIIIASIVFIIIHSLRSKKDHGLINWPIFGMLPSLIIGLKTSNMYERLTDILIYQNGTFRFKGPWFTSLNCIVTSEPQNVEHLLKTRFTNFPKGNCVKDTVSDLLGDGIFAADNETWQKQRKTASIEFHSTKFRKLTIESLFELVNNRLIPVLDSSFKKSVSIDLQDILLRLTFDNVCMIAFGVDPGCLQPHLPVIPFAAAFEDATEAILLRFPTLACVWKTMRFLNLGIERKLKKSIQKVDEFADNVISERKKELSLENEHDVDDDTRKSDLLTVFMRLKDENGMAYSDKFLRDICVNFILAGRDTSSVALSWFFWLIDQNHEVEERILEEICRVVSEREEINKKEEFDNNCLRFMPEEIKKMDYLHAALSEALRLYPSVPMDHKEVVEDDKFPDGTELKKGTKVIYAIYSMGRMESIWGKDCLEFKPERWLTKEGNFISESAYKFTAFNGGPRLCLGKDFAYYQMKYVAASVIFHYHVKVVENHPIVPKLSLTLYMKHGLKVNLHRRCGEEVGKYLKFS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01459 575 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 504 513 IPR017972 GO:0005506|GO:0016705
Trre1g01459 575 PRINTS P450 superfamily signature 423 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS P450 superfamily signature 357 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS P450 superfamily signature 502 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS P450 superfamily signature 511 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 FunFam Cytochrome P450 68 566 - -
Trre1g01459 575 PRINTS E-class P450 group I signature 501 511 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS E-class P450 group I signature 422 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS E-class P450 group I signature 366 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS E-class P450 group I signature 346 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PRINTS E-class P450 group I signature 511 534 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 Gene3D Cytochrome P450 75 571 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 CDD CYP86A 113 556 - -
Trre1g01459 575 Pfam Cytochrome P450 80 548 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 SUPERFAMILY Cytochrome P450 78 563 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01459 575 PANTHER CYTOCHROME P450 64 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01459 Trre-Chr1 11105130 11107542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01459 40 571 Cytochrome P450 AT5G23190 67.293 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01459 K15402 - gmx:100809503 794.267