Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01457 ATGATAGAGGCACTAATTTCCTTTTTGAATGCACAGGCTGCTCAACTCAATTTTTTTGTTGGATCTCATGTTTGGGTTGAAGACCCTGATGTAGCATGGATAGATGGAGAAATTCTTGAATCTAAAGATCAAGAGATCACCATTAGCAATGAATCAGGAACAAAGGTTGTAAGCAAATCAGCTAATATCTATCCAAAAGATCCTGAATTTCCAACCGAGGGCGTGGAAGATATGACAAGACTTGCATATCTGCACGAACCGGGTGTACTTCAAAATTTGCAAATTCGTTATAGTATCAATGAAATATATACATACACAGGAAACATATTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCACATGAGACAATGGCAAAGTATAAAGGTGTGGCTTTTGGTGAGCAGAGTCCACATCCTTTTGCAATTGCAGGTTATGCATATAGCAAGATGATAAATGAAGAAAGAAGCCAAGCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAAAGTACAAAGATGCTTATGCATTATCTTGCCTATTTAGGAGGGAGAGCAGCAACTGAGGGAAGGTCTGTGGAGCAACAAGTTCTAGAGTCCAATCCTGTTTTAGAAGCATTTGGGAATGCAAAGACTGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACTTACTTGCTGGAACGATCACGTGTTTGTCAAGTTTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCACAAGAGGATGTTGATAGGTTCAAATTGGGAAATCCAAGAAGCTTTCATTACCTCAATCAATCAAATTGCTTTGAATTGGATGCATTGGATGATTCTAAGGAGTATCTTGCAACTAGAAGAGCCATGAATGTTGTTGGAATTAACAATGATGAACAGGATGCTATATTTCGAATAGTAGCCGCTGTACTTCATTTAGGAAATATTGAATTTGTTAAAGCAATGGATGAAGGGATGGATTCCTCTAAACCGAAGGACGATAAATCTTATTTCCATTTGAAAACTGCAGCTGAACTTTTGATGTGTGATGAAAAGTCCCTTGAAGACTCATTTTGCAAACGAGTTATGGTGACTCGTGGTGATACGATAACAAAATGTCTTGATCCAGATTCTGCAGCTCTAAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTCGACTGGATTGTGGAGAAGATTAACAACTCTATTGGACAAGATCCAAATTCAAAGAACTTAATTGGAGTTCTAGATATATATGGATTTGAAAGTTTCAAGACAAACAGCTTCGAGCAATTTTGTATCAACTTGACAAATGAGAAGTTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAAGAAGAGATTGATTGGAGTTATATCGAGTTTGTTGATAATCAAGATGTTCTTGATCTTATTGAGAAGAAACCTGGTGGTGTTATTGCTCTTCTGGATGAGGCCTGTATGTTCCCAAGATCAACGCACGAAACATTTGCTGAAAAGCTATATCAAACACTCGGTAACAATAAACGCTTCAGCAAGCCAAAGTTGTCGCGAACTGATTTCACAATCAATCACTACGCCGGTGATGTCACTTATCAAACCGACCTTTTCCTTGATAAAAACAAAGACTATGTTGTTCCGGAGCATGCTGCGCTGCTTAGTGCTTCCAATTGCTCCTTTGTTTCAGGACTTTTCCCACCTTTACCTGAGGAAACTACGAAATCGACAAAGTTTTCATCCATAGCCACTCAGTTTAAGCAACAACTGCAAGCTTTGCTTGAAACATTGAATGCCACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAACCAGGGATATTCGAGAACAACGATGTATTGCAGCAGCTTCGATGTGGGGGAGTAATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCAACTAGAAAGACCTTCGATGAATTTGTTCAGCGGTTTACTATATTGGAACCTAAGGTTTTAAAATCATGCCCTGATGAGACGACTGCTTGCAAAAGGCTTCTAGATAAAGCAAATCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTTTGAGGGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCCTAGGAAGATCTGCAATCGTTATTCAGAAAAAAGGTCGCACGTTTATTTGTGAGAAAAAATACAAATTAATGCGATTCTCTGCCACAGAAGTACAAAGAGCTGTTAGAGGACAACTTGCAAGACTTTGTTACGAACGCATGAGAAGGGAGGCTGCCTCTTTGATAATTCAGAAACAATGCCGCATGTATCTTTCGAGAAGTGCTTATAAAACTACCTATGCCAGAGCTGTTTGTATTCAAACCGGCATGCGAGGGATGGCTGCTAGAAATGAACTTAGATACAGGAGGCGGACACAAGCTGCAATTGTTATTCAAGGTCGATACAGATGTTATCGAGCTCGTACTTATTACAAAAGGCTAAAGAGAGCATCAATTGCAGTACAGTGTTCGTGGAGGCGAACAAGAGCACGACGAGAACTTCGAAAGCTTAGAATGGCTGCGAAGGAATCAAAGGCCCTAGAAGCCGCGAAACTTAATCTAGAAAAGCAAGTTGAGGAACTAACTTCGTCTCTAGAATCAGAAAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAACATGCTTTGGAAGAGATGGAGGTTCGATTCGAAGAAACTAAGACGAAACTCACTCAGGAATGTGAGGCTGCGAAGAAAGCAGCTGAGCAAACACCAACTATACATGAAAATGAAAATAATGTTGCTGACAATGAATTGGTAAATAAGCTTACTGCAGAGAATGAAAAACTCAAGGAGATTGTTAATTCAATGGAAAATAAAACTAAACTAGAGCTTCCTGATAATGTTACTGGCAATGAAGTGATTAATAAGCTTTCTGAAGAAAATGAACAGCTCAAGGAGCTTGTTAATTCATTGGAAAAGAAAACTAAAGACGAGATTCCTGCCCATTTTACTGAGAATGAAGTGATTAGTAAGCTTACAGAAGAAAAAGAACAGTATAGGGAACAGGTTAAATCATTGGAAAAGAAAATTGACGAGACAGAGAAGAAATATGAAGAAAGTAGCAGGCAAAGTGAGGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGCTAAAGACAAAATTGCAAAGGCTTGAAGAAAAATTTTCTGATTTGGAATCTGAGAATCAAATTTTTCGGAAGCAAGCACTTTTGAGTTCAACATCCCAGAGAATGACAGACAAAGTTGCTGCAATTCCGCCTCTGGAAAATGGTCAACAGGCACCAGTAAAAACACTTGGTACAGCAGAATCTGTGAGGAGATCTCATATGGAGAGACATCAAGAAAGTGTAGAGACTCTTTTCAAATGTGTGACAAAAGAAGACCTTGGATTCTGTGAAGGGAAACCTGTTGCAGCATTTACCCTTTATAACTGTTTACTACATTGGAAATCTTTTGAAGCAGAGAAAACAAGTATATTTGATCGTCTTATTATGCTCATTGGCTCCGCAATAGAGGATCAGGATAATAACAATTGTATGGCTTATTGGTTATCCAATACCGCTGCTTTGTTTTTCCACCTTCAACGATGTCTAAGAGTACCAGCACGAAAACCACCCACTCCGACAGGGTTTTTCGGGAGGATGGCCCAGGGTTTCAGATCATCGAATAGTCTTTCCAGTAGTGCATTTGATGTAGTGCAACAAGTTGATGCAAAGTATCCAGCTTTGCTGTTCAAGCAACAACTTGCAGCTTATGTAGAAAAGATATATGGAATTGTTCGAGAAAATATGAAGAAAGAATTGTCTCCTCTTCTTTCTTCTTGCATCAAGGATCCCAAAACACAAGACGGCAACGGCCAACCAGCTGGTTCATGGCACGACATTACTGAGTGCCTTAATAAATTTCTCAATATTTTGAAAGAAAATTACGTGCCTCCTGTTCTAATTCAAAAGGTATTTAATCAGACTTTTCAATACATCAACGCAGAAATCTTTAACAGCCTTATATTGCATAAAGAATGTTGCACACTCGAAAATGGAGAATATGTAAAATCAGGGTTAGCTGAACTAGAACAATGGTGTAATGAAGTAACCGAAGAGTATGCTGGCACATCTTTGGATGAACTCAACCATTCAAAACAAGCAGTTAGATTCATGGTTTCTGAAAAGAAAGATGAACTATCCTATGATGATCTTACAAACGACGTCTGCCCTGTGCTGAGTCCTCAACAGCTTTATAGAATATGTACACTATTCTTGGATGAAAATGACAATACCAAGAGTGTATCAACAGATGTCACTACTAGATTAAAGCTTCTAATGACAGATGATGTAGTTGATGATGACAAATCCTTCTTGTTAGAAGACAATTCAAGTGTTCCTATTATTGTTGAAGAGATTTCTCATTCAAATCAAGATAAGACAATTCCAAAAGTAAAACCACCTGCAGAACTACTTGAGAGTGCAGCCTTCCAATTTTTACATGATTATAGTTAA 4680 0.3842 MIEALISFLNAQAAQLNFFVGSHVWVEDPDVAWIDGEILESKDQEITISNESGTKVVSKSANIYPKDPEFPTEGVEDMTRLAYLHEPGVLQNLQIRYSINEIYTYTGNILIAVNPFQRLPHLYAHETMAKYKGVAFGEQSPHPFAIAGYAYSKMINEERSQAILVSGESGAGKTESTKMLMHYLAYLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVDRFKLGNPRSFHYLNQSNCFELDALDDSKEYLATRRAMNVVGINNDEQDAIFRIVAAVLHLGNIEFVKAMDEGMDSSKPKDDKSYFHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKCLDPDSAALSRDALAKIVYSRLFDWIVEKINNSIGQDPNSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTLGNNKRFSKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLSASNCSFVSGLFPPLPEETTKSTKFSSIATQFKQQLQALLETLNATEPHYIRCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVQRFTILEPKVLKSCPDETTACKRLLDKANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSAIVIQKKGRTFICEKKYKLMRFSATEVQRAVRGQLARLCYERMRREAASLIIQKQCRMYLSRSAYKTTYARAVCIQTGMRGMAARNELRYRRRTQAAIVIQGRYRCYRARTYYKRLKRASIAVQCSWRRTRARRELRKLRMAAKESKALEAAKLNLEKQVEELTSSLESEKRMREAKTQENEKLQHALEEMEVRFEETKTKLTQECEAAKKAAEQTPTIHENENNVADNELVNKLTAENEKLKEIVNSMENKTKLELPDNVTGNEVINKLSEENEQLKELVNSLEKKTKDEIPAHFTENEVISKLTEEKEQYREQVKSLEKKIDETEKKYEESSRQSEERMNQIIETESKMIELKTKLQRLEEKFSDLESENQIFRKQALLSSTSQRMTDKVAAIPPLENGQQAPVKTLGTAESVRRSHMERHQESVETLFKCVTKEDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIMLIGSAIEDQDNNNCMAYWLSNTAALFFHLQRCLRVPARKPPTPTGFFGRMAQGFRSSNSLSSSAFDVVQQVDAKYPALLFKQQLAAYVEKIYGIVRENMKKELSPLLSSCIKDPKTQDGNGQPAGSWHDITECLNKFLNILKENYVPPVLIQKVFNQTFQYINAEIFNSLILHKECCTLENGEYVKSGLAELEQWCNEVTEEYAGTSLDELNHSKQAVRFMVSEKKDELSYDDLTNDVCPVLSPQQLYRICTLFLDENDNTKSVSTDVTTRLKLLMTDDVVDDDKSFLLEDNSSVPIIVEEISHSNQDKTIPKVKPPAELLESAAFQFLHDYS 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01457 1559 ProSiteProfiles IQ motif profile. 867 896 IPR000048 GO:0005515
Trre1g01457 1559 Coils Coil 1053 1129 - -
Trre1g01457 1559 Gene3D - 452 636 - -
Trre1g01457 1559 ProSiteProfiles Dilute domain profile. 1222 1504 IPR002710 -
Trre1g01457 1559 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 19 68 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 ProSiteProfiles IQ motif profile. 796 822 IPR000048 GO:0005515
Trre1g01457 1559 ProSiteProfiles IQ motif profile. 821 848 IPR000048 GO:0005515
Trre1g01457 1559 ProSiteProfiles IQ motif profile. 844 873 IPR000048 GO:0005515
Trre1g01457 1559 ProSiteProfiles Myosin motor domain profile. 73 745 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 895 IPR027417 -
Trre1g01457 1559 Coils Coil 880 952 - -
Trre1g01457 1559 Pfam Myosin head (motor domain) 75 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 PANTHER MYOSIN 65 844 - -
Trre1g01457 1559 FunFam Myosin 2 323 441 - -
Trre1g01457 1559 CDD MYSc_Myo11 87 733 IPR036018 -
Trre1g01457 1559 Coils Coil 1018 1041 - -
Trre1g01457 1559 FunFam Myosin heavy chain 263 318 - -
Trre1g01457 1559 FunFam Class V myosin 452 591 - -
Trre1g01457 1559 SMART DIL_2 1379 1486 IPR002710 -
Trre1g01457 1559 FunFam unconventional myosin-Va 847 894 - -
Trre1g01457 1559 Pfam Myosin N-terminal SH3-like domain 21 61 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 Gene3D - 680 743 - -
Trre1g01457 1559 Coils Coil 983 1003 - -
Trre1g01457 1559 Pfam DIL domain 1380 1480 IPR002710 -
Trre1g01457 1559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 798 IPR027417 -
Trre1g01457 1559 CDD MyosinXI_CBD 1172 1526 IPR037975 GO:0007015
Trre1g01457 1559 FunFam unconventional myosin-Va 798 846 - -
Trre1g01457 1559 Gene3D - 799 845 - -
Trre1g01457 1559 Gene3D - 748 798 - -
Trre1g01457 1559 Gene3D - 846 895 - -
Trre1g01457 1559 ProSiteProfiles IQ motif profile. 771 800 IPR000048 GO:0005515
Trre1g01457 1559 Pfam IQ calmodulin-binding motif 845 865 IPR000048 GO:0005515
Trre1g01457 1559 Pfam IQ calmodulin-binding motif 798 817 IPR000048 GO:0005515
Trre1g01457 1559 SMART MYSc_2a 67 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 PRINTS Myosin heavy chain signature 495 523 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 PRINTS Myosin heavy chain signature 442 470 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 PRINTS Myosin heavy chain signature 207 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 PRINTS Myosin heavy chain signature 160 185 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 PRINTS Myosin heavy chain signature 103 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g01457 1559 SMART iq_5 843 865 IPR000048 GO:0005515
Trre1g01457 1559 SMART iq_5 866 888 IPR000048 GO:0005515
Trre1g01457 1559 SMART iq_5 818 840 IPR000048 GO:0005515
Trre1g01457 1559 SMART iq_5 795 817 IPR000048 GO:0005515
Trre1g01457 1559 SMART iq_5 770 792 IPR000048 GO:0005515
Trre1g01457 1559 SMART iq_5 747 769 IPR000048 GO:0005515
Trre1g01457 1559 Gene3D Kinesin motor domain 76 675 IPR036961 -
Trre1g01457 1559 Gene3D - 263 321 - -
Trre1g01457 1559 Gene3D Myosin VI head, motor domain, U50 subdomain 323 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01457 Trre-Chr1 11077767 11090700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01457 13 1557 Myosins gene family AT1G04600 58.746 0.0 1944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01457 K10357 - gmx:100788123 2399.39