Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01444 ATGAGTTCCAGCTCTAAACAAACTCAGCTTCCAGCCGAGGTAGAAAAAGTCGACGATGCTTACCTCTCCGCGTTGATATTATCTTTTAGTCGCATTTTTCCAGCGATTTTAAATGCCGCCGTTGATCTGAATTTGTTTGATATCATAGCTAAGTTACAAAGTTCAAGTGGTAATAATTCTAGTTTCTCTGCTTCTGAAATTGCTTCTCAGTTTCCAAATCAACACACTGAATTGGCTGAGAGGCTTGAACGCATGTTGAATGTGTTGGCTAGCAATTCTCTTCTCAATTGTTCAATTCGTACAAATGAAGATGGTAAGAGAGAAAGAGTTTTTGGTCTCTCTTCAATTGGTCAATACTTTGCATATGATAAAGATGGAGGCTCTTTGGGTCCACTCTCAACATTAGTCCATAGAGGATATAATGGTGTTTGGTATGATGTAAAAGATGCAATTATAAACCCTAACAACAATGATCATTTTCATAAAGTTCATGGATCACCTGCTTATCAATATTTAGAGAAAAATCAAGAGCTAAATCAAATTTTTAACAAAGCAATGGCTCATTCTGGTCCATTAGAAATGAAAAGGGTCCTTACACTATATAAAGGATTTGAGGGAGTCTCAACATTGGTTGATGTAGGAGGTGGAGTAGGGAATGCTTTGAAACAAATTATATCTGAATATCCTTCAATAAAAGGTATCAATTTTGATTTGCCTCAAGTGATTCAAGATGCACAACCTCATCCAGGTATAGAGCATGTTGAAGGAAGTATGTTTGAAAGTGTTCCAACTGGTGATGCCATCTTACTAAAGCTTGTATGTCACAATTGGGCTGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTCACAAAGCTTTGCCAACACATGGAAAGGTGATTGTTTTGGATTATATAATTCCAGAGGTTCCAAATTCAAACAATATCTCTAAGCATGCTTGTGCTATTGACAATCTCATGTTTTTAATACATGGTGGAAAGGAAAGAACTGAAAATGAATTTCAGCACTTGTGCATGAGCTCTGGATTTTCCAAATTCCATATTGCTTGCAGTGATATTTCGGCTATGTCGGGAGTGATGGAATTCTATAAATAA 1113 0.363 MSSSSKQTQLPAEVEKVDDAYLSALILSFSRIFPAILNAAVDLNLFDIIAKLQSSSGNNSSFSASEIASQFPNQHTELAERLERMLNVLASNSLLNCSIRTNEDGKRERVFGLSSIGQYFAYDKDGGSLGPLSTLVHRGYNGVWYDVKDAIINPNNNDHFHKVHGSPAYQYLEKNQELNQIFNKAMAHSGPLEMKRVLTLYKGFEGVSTLVDVGGGVGNALKQIISEYPSIKGINFDLPQVIQDAQPHPGIEHVEGSMFESVPTGDAILLKLVCHNWADEECVKFLRNCHKALPTHGKVIVLDYIIPEVPNSNNISKHACAIDNLMFLIHGGKERTENEFQHLCMSSGFSKFHIACSDISAMSGVMEFYK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01444 370 PANTHER O-METHYLTRANSFERASE 28 358 IPR016461 GO:0008168
Trre1g01444 370 FunFam Uncharacterized protein 122 370 - -
Trre1g01444 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 370 IPR016461 GO:0008168
Trre1g01444 370 Pfam O-methyltransferase domain 144 350 IPR001077 GO:0008171
Trre1g01444 370 Gene3D - 2 120 IPR036388 -
Trre1g01444 370 FunFam Caffeic acid 3-O-methyltransferase 2 120 - -
Trre1g01444 370 Pfam Dimerisation domain 36 90 IPR012967 GO:0046983
Trre1g01444 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 357 IPR029063 -
Trre1g01444 370 CDD AdoMet_MTases 209 306 - -
Trre1g01444 370 Gene3D Vaccinia Virus protein VP39 128 370 IPR029063 -
Trre1g01444 370 PIRSF O-mtase 1 370 IPR016461 GO:0008168
Trre1g01444 370 SUPERFAMILY "Winged helix" DNA-binding domain 17 124 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01444 Trre-Chr1 10879956 10882619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01444 4 356 Monolignol Biosynthesis Gene Families AT5G54160 43.978 1.83e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01444 - - aprc:113869089 563.533