Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01442 ATGGCCAATAAATCTGAATCCGAAGTCTGTGATGATGCAATTCCACCTCCAAAAATTTGCAAAAGAGAGTGTGAGGATGAAGATCAGGAGGAAGTGATTACAAAGAAGCAGAAGAGAGATGATGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATTATTCTGAAAATGATAATAAACTTGAAGCTGAAAACGAATCGGCTACTGGTTGTGGTAATTTGGAATCATTGGATGATGGTAGCTCAGATTCTGACTCTCACAGAAGCTCTGGTGAGGATAATCCTGAAGATTTGGAGAGTCCAGAGTACAATGAGGAAGAAGTAGAGGAAAAAGTTTTCAACACACCTCAGGAAGAAAGGCATGAAACCCCAGTCACTCTAAACGGAAAATATGCTGAATCAAAGACAATATATGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAATTGTTGATGTTCGATTCAACACAGATCCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAAGCCCTTGAATTGGATGATACAGAATTATTGAATCGTCGCATGAAAGTTGGTATAGCTGTAGAAAAGAGTGAATATCCCCCCTATAAAAGCAACTTGAGCAGCTCATTCAATAAGGGTGGAAATCTTCAATCTCACACCGTAAAGGGTTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAATGGTGCATCAAAGACCATATATGTCAGAAACTTGGCATACTCCGTGGAACGACCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGATCGCGAAGGGAATTTTAAAGGCTATGGACATGTTCAGTTTGCCACAGCAGAAGCAGCACAGAAGGCTCTTGCGTTCAATAAGAAAGTATTTTTTAAGCGCCTTATGTTTGTTGGCTTAGCTTTGGAAAGGGGCAAATATTCCCCTAATAGAAGCAGCTGGTCCTGGAGCAGCTCATTCCATAAGGATGAAAATATTCAGTCTCAAACTGTCCCTGTGAAGTGTTTTGATACACCCCTTGCGGAAGACAAATTGACTTGTGCAAAGGAGGAGGTTAAAGATATAGAGATGTTTGATGCTGCCTCTGCTGAGAGTAAAGTTCCTGAAACCCTATCTACCGGAAAAGAGAAAAATGATGCATCAAAAACAATATGTGTTAGAAATTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGCGGAGAAGTTGTTGATGTCCGACTGCATGTGGATGTTGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTTTTGAACCGTCCCATCAAAGTTGGTACAGCTTCAGAAGATGGTGAATGTTTGCCGAATAGAGGCTCGAGCATCTCATTCCAGAAGGCCGAAAATTTGCAGTCTCTAACTGTATTTGTGATTGGATTTGATACATCCGTTCCAGAAGACAAGATAAAAGCTAGCCTGTACAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCATTACCAAAATTTCCTGATTCTGGTACTGTTAAGGGGTTTGCTCATTTGGATTTCAAGGATTCTGATGGCTATAACAAAGCACTACAACTTAATAAAAGTGCGATTGGAAATTTTTGGTTGTCAGTTGAAAAAGCAAAGCCAAGGATAAGACGTGATAGTCATGGTATAGGTGGTGGCAGAGGTGGCTATCATGGTGGTAGGGATGGAGAAGACTATGGCGGGAGAACTGGTTGGGGCAGAAGTCATGGTGCAGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA 1920 0.412 MANKSESEVCDDAIPPPKICKRECEDEDQEEVITKKQKRDDEVVVKQENEEEINPDYSENDNKLEAENESATGCGNLESLDDGSSDSDSHRSSGEDNPEDLESPEYNEEEVEEKVFNTPQEERHETPVTLNGKYAESKTIYVRNLSYSVERADMEDIFKDCGEIVDVRFNTDPEGRFRGFGHVEFGTAEAAQKALELDDTELLNRRMKVGIAVEKSEYPPYKSNLSSSFNKGGNLQSHTVKGFDASLVENKPKSPATPNETNGASKTIYVRNLAYSVERPDMENLFKDCGEIVDVRLHTDREGNFKGYGHVQFATAEAAQKALAFNKKVFFKRLMFVGLALERGKYSPNRSSWSWSSSFHKDENIQSQTVPVKCFDTPLAEDKLTCAKEEVKDIEMFDAASAESKVPETLSTGKEKNDASKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEKALELDNTRFLNRPIKVGTASEDGECLPNRGSSISFQKAENLQSLTVFVIGFDTSVPEDKIKASLYKHFCSCGEITRISLPKFPDSGTVKGFAHLDFKDSDGYNKALQLNKSAIGNFWLSVEKAKPRIRRDSHGIGGGRGGYHGGRDGEDYGGRTGWGRSHGAGRHWTANTEHW 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01442 639 Gene3D - 494 628 IPR012677 -
Trre1g01442 639 MobiDBLite consensus disorder prediction 83 98 - -
Trre1g01442 639 MobiDBLite consensus disorder prediction 67 82 - -
Trre1g01442 639 SUPERFAMILY RNA-binding domain, RBD 255 354 IPR035979 GO:0003676
Trre1g01442 639 MobiDBLite consensus disorder prediction 110 127 - -
Trre1g01442 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 214 IPR000504 GO:0003723
Trre1g01442 639 SUPERFAMILY RNA-binding domain, RBD 415 498 IPR035979 GO:0003676
Trre1g01442 639 SUPERFAMILY RNA-binding domain, RBD 131 232 IPR035979 GO:0003676
Trre1g01442 639 SUPERFAMILY RNA-binding domain, RBD 505 621 IPR035979 GO:0003676
Trre1g01442 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 342 IPR000504 GO:0003723
Trre1g01442 639 SMART rrm1_1 511 587 IPR000504 GO:0003723
Trre1g01442 639 SMART rrm1_1 139 210 IPR000504 GO:0003723
Trre1g01442 639 SMART rrm1_1 267 338 IPR000504 GO:0003723
Trre1g01442 639 SMART rrm1_1 422 483 IPR000504 GO:0003723
Trre1g01442 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 208 IPR000504 GO:0003723
Trre1g01442 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 521 581 IPR000504 GO:0003723
Trre1g01442 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 333 IPR000504 GO:0003723
Trre1g01442 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 423 481 IPR000504 GO:0003723
Trre1g01442 639 MobiDBLite consensus disorder prediction 618 639 - -
Trre1g01442 639 MobiDBLite consensus disorder prediction 1 127 - -
Trre1g01442 639 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 253 341 - -
Trre1g01442 639 MobiDBLite consensus disorder prediction 15 66 - -
Trre1g01442 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 510 591 IPR000504 GO:0003723
Trre1g01442 639 Gene3D - 101 226 IPR012677 -
Trre1g01442 639 Gene3D - 380 491 IPR012677 -
Trre1g01442 639 Gene3D - 231 352 IPR012677 -
Trre1g01442 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 421 487 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01442 Trre-Chr1 10857414 10868051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01442 124 340 Eukaryotic Initiation Factors Gene Family AT1G34140 29.279 2.45e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01442 - - tpra:123897326 1047.73