Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01438 ATGTCTTTACCAACTGATCCAGACTATTTAAACAAATCCGACAACGCGTGGCAACTAGTCGCGGCCACATTTGTCGGTCTCCAAAGTGTTCCAGGACTAATAATATTATATGGCGGAGCGGTTAAAAAAAAATGGGCAGTGAATTCAGCATTCATGTCACTCTATGCATTTGCTTGTGTATATCTATGTTGGGTTATTTGGGGTTATAGATTATCATTTGGTGATAAACTTTTGCCATTTTGGGGAAAACCAGCACTTGCACTTGATGAAGTTTATCTTTTTAAAAAAGCATTTTCAGGGAATTTTCCAAATGCTACTATGATTTACTTTCAAGGTGTTTTTGCTGCTATTACTTTGATTTTGATAGCTGGTGCTGTGTTGGGAAGAATGAACTTCTATGCTTGGATGTTGTTTGTGCCTTTATGGCTCACTTTTTCTTATACTTTTACTGCTTTTAGCATTTGGAGTCCAAATGGCTTTTTGACCAAGTTAGGGATTATTGATTACTCTGGTGGTTATGTTATTCATTTGTCTTCTGGTGTTGCTGGTTTCACTGCTGCATATTGGGTTGGACCGCGTCTAAACAAGGACAGGGAAAGGTTTCCACCAAACAACCTCCTTCTCATGCTCGCCGGAGCAGGGCTTTTATGGATGGGATGGACAGGATTCAATGGAGGAGATCCTTACTCAGTTGGAATAGATGCTTCTTTAGCTGTCTTGAACACACATGCTTGTACTGCTACTAGCTTGCTAACTTGGGTTTTACTTGATGTCATCTTTTTTAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTAGTTTGCATTACCCCTGCTGCAGGAGTTGTACAAGGATGGGCAGCCCTTATAATGGGAGTATTCTCTGGCTCAATTCCATGGTTTACTATGATGGTAATCCACAAAAGATCAAAGTTACTTCAAAAGGTAGATGACACAATGGCAGTGTTACATACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTCTTTGCTGAGCCAAAATTGAATGCATTGTTCTATGGTGCTTATAATAAATATGTTGGTTTATTTTATGGATTACAAATGAACATGGCTAGAACTGGTTTTAGACAAATTGGAGTCCAATTAATTGGAATTTTGTTTGTTATATTTGTTAATGTTGTAAGTACAAGTTTGATATGTCTCTTCATTCGTATTTTCGTTCCATTGAGAATGTCCGAAGAGGATATGGAAATCGGTGACGAAGCTGCTCATGGTGAAGAAGCTTATGCAATTTGGGGTCAAGGTGATAAACTTGAGAATCCAAGTTCAAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCCACGACGAAGAAAAAGCGCGGTAGCCAGATTGAGATGATGTAA 1413 0.3885 MSLPTDPDYLNKSDNAWQLVAATFVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVYLCWVIWGYRLSFGDKLLPFWGKPALALDEVYLFKKAFSGNFPNATMIYFQGVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLTKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGIDASLAVLNTHACTATSLLTWVLLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNALFYGAYNKYVGLFYGLQMNMARTGFRQIGVQLIGILFVIFVNVVSTSLICLFIRIFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENPSSKYGSSLYEDVEVATTKKKRGSQIEMM 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01438 470 FunFam Ammonium transporter 1 433 - -
Trre1g01438 470 NCBIfam ammonium transporter 14 430 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre1g01438 470 ProSitePatterns Ammonium transporters signature. 168 193 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre1g01438 470 PRINTS Rhesus blood group protein signature 111 127 IPR002229 GO:0005886
Trre1g01438 470 PRINTS Rhesus blood group protein signature 207 225 IPR002229 GO:0005886
Trre1g01438 470 PRINTS Rhesus blood group protein signature 238 260 IPR002229 GO:0005886
Trre1g01438 470 Gene3D Ammonium transporter AmtB like domains 4 434 IPR029020 -
Trre1g01438 470 SUPERFAMILY Ammonium transporter 9 412 - -
Trre1g01438 470 PANTHER AMMONIUM TRANSPORTER MEP2 6 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre1g01438 470 Pfam Ammonium Transporter Family 16 430 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01438 Trre-Chr1 10852653 10855345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01438 105 466 Inorganic Solute Cotransporters AT2G38290 61.326 5.83e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01438 K03320 - gmx:100787856 818.535