Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01437 ATGTCTGTAGTACCAACTGATCCCGACTATTTAACCAATGACAAAGCCGACAACGCATGGCAACTAGTCGCGGCCACATTTGTCGGTCTCCAAAGTGTTCCGGGACTAATAATATTATACGGCGGAGCGGTTAAAAAAAAATGGGCAGTGAATTCAGCATTCATGTCATTCTATGCATTTGCTTGTGTATTTCTTTGTTGGGTTATTTGGGGTTATAGATTATCATTTGGTGATCAACTTTTGCCATTTTGGGGAAAACCAGCACTTGCACTTGATGAAGTTTATCTTTTTAAAAAAGCATTTTCAGGGAATTTTCCAAATGCTACTATGATTTATTTTCAAGGTGTTTTTGCTGCTATTACTTTGATTTTGATAGCTGGTGCTGTGTTGGGAAGAATGAACTTCTATGCTTGGATGTTGTTTGTGCCTTTATGGCTCACTTTTTCTTATACTTTTACTGCTTTTAGTATTTGGAGTCCAAATGGCTTTTTGACTAAGTTAGGGATTATTGATTACTCTGGTGGTTATGTTATTCATTTGTCTTCTGGTGTTGCTGGTTTCACTGCTGCATATTGGGTTGGACCGCGTCTAAACAAAGACAGGGAAAGGTTTCCACCAAACAACCTCCTACTCATGCTCGCCGGAGCAGGGCTGTTATGGATGGGATGGACAGGATTCAATGGAGGAGATCCTTACTCAGTTGGAATAGATGCTTCCTTGGCTGTCTTGAACACACATGCTTGTACTGCTACTAGCTTGCTTACTTGGGTTTTACTTGATGTCATCTTTTTTAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTAGTTTGCATTACCCCTGCTGCAGGAGTTGTACAAGGATGGGCAGCCCTTATAATGGGAGTATTCTCTGGCTCAATTCCATGGTTTACTATGATGGTAATCCACAAAAGATCAAAGTTACTTCAAAAGGTAGATGACACAATGGCAGTGTTACATACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTATTTGCTGAGCCAAAATTGAATGCATTGTTCTATGGTGCTTATAATAAATATGTTGGTTTATTTTATGGATTACAAATGAACATGGCTAGAACTGGATTTAGACAAATTGGAGTCCAATTGATTGGAATTTTGTTTGTTATATTTGTTAATGTTGTAAGTACAAGTTTGATATGTCTCTTTGTTCGTATTTTTGTTCCATTGAGAATGTCCGAAGAGGATATGGAAATCGGTGATGAAGCTGCTCATGGCGAAGAAGCTTATGCAATTTGGGGTCAAGGTGATAAACTTGAAAATCCAAGTTCAAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCCACGGCGAAGAACAAGCGCGGTAGCCAGATTGAGATTATGTAA 1422 0.3903 MSVVPTDPDYLTNDKADNAWQLVAATFVGLQSVPGLIILYGGAVKKKWAVNSAFMSFYAFACVFLCWVIWGYRLSFGDQLLPFWGKPALALDEVYLFKKAFSGNFPNATMIYFQGVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLTKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGIDASLAVLNTHACTATSLLTWVLLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNALFYGAYNKYVGLFYGLQMNMARTGFRQIGVQLIGILFVIFVNVVSTSLICLFVRIFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENPSSKYGSSLYEDVEVATAKNKRGSQIEIM 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01437 473 FunFam Ammonium transporter 2 436 - -
Trre1g01437 473 Gene3D Ammonium transporter AmtB like domains 7 437 IPR029020 -
Trre1g01437 473 NCBIfam ammonium transporter 17 433 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre1g01437 473 ProSitePatterns Ammonium transporters signature. 171 196 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre1g01437 473 PANTHER AMMONIUM TRANSPORTER MEP2 13 444 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre1g01437 473 PRINTS Rhesus blood group protein signature 210 228 IPR002229 GO:0005886
Trre1g01437 473 PRINTS Rhesus blood group protein signature 241 263 IPR002229 GO:0005886
Trre1g01437 473 PRINTS Rhesus blood group protein signature 114 130 IPR002229 GO:0005886
Trre1g01437 473 Pfam Ammonium Transporter Family 19 433 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre1g01437 473 SUPERFAMILY Ammonium transporter 14 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01437 Trre-Chr1 10844836 10848613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01437 108 469 Inorganic Solute Cotransporters AT2G38290 61.050 1.45e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01437 K03320 - gmx:100787856 812.372