Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01435 ATGCCTCCACGAATGATCCGAACAGGAAGACAATCGGCGGACAGTAATCGTCTTCGTGTATTAGAGATTTTCCGACACGGGGGATCATCATCTAATCCTCTTGAAAAAGATAATGTTATTGAAAATTCACATAGGGACTTATCTCAGCCTAAAAATAATTCAGTTGAGCCTAAACTGAAAGCATCTGAGCCTCCAAAAGAGGATGACTTTATTTGCCCAATATGCATGGATCCTTTAGTAGAGGAAATGTCAACAAGGTGTGGCCACATTTTTTGCAAGAAGTGCATCACAAGTGCAATAGCTTCAAAGAGTACATGCCCTACTTGTAGAAAAAATGTTTCTAAGAAAGAACTAATAAGGGTGTTTCTTTCATCATCCACTTGA 384 0.3906 MPPRMIRTGRQSADSNRLRVLEIFRHGGSSSNPLEKDNVIENSHRDLSQPKNNSVEPKLKASEPPKEDDFICPICMDPLVEEMSTRCGHIFCKKCITSAIASKSTCPTCRKNVSKKELIRVFLSSST 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01435 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 126 IPR013083 -
Trre1g01435 127 PANTHER ELFLESS, ISOFORM B 39 124 - -
Trre1g01435 127 SUPERFAMILY RING/U-box 62 116 - -
Trre1g01435 127 Pfam Zinc finger, C3HC4 type (RING finger) 72 109 - -
Trre1g01435 127 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Trre1g01435 127 SMART ring_2 72 109 IPR001841 -
Trre1g01435 127 MobiDBLite consensus disorder prediction 27 65 - -
Trre1g01435 127 ProSiteProfiles Zinc finger RING-type profile. 72 110 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01435 Trre-Chr1 10835937 10836469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01435 28 126 C3H Transcription Factor Family AT3G07200 45.192 2.09e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01435 K22651 - cave:132188663 110.538