Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01411 ATGAATGTGCATCACATCACAAGCAAGAATTTCACCAACTATGGTAAGGGATCTGATTTCCATGAAATTTTTGAAATTTTTGGTGTTGGTATTTTCAATTTGGATTCCAATGAATGGAAACAAGAGAGAGAAATATATCATTCATTGCTCAATAGAAAAAACTTTAAGATATTTTTTCAACAAAACATTCAAAAGAAGCTTGAGAATTGCCTATTACCATTTCTCGATCATGCATCGAAAGGTGTATTAATAATTGATTTACAAGATATTCTTGGGAGGTTTACCTTTGATATTGCTTTTACTTCTATATTTGGATTTGATTCTAATTGCCTTCCTTACAACTTCGACGAGTTACCTGAAATTCCTTTTGTAAAAGCTATTTCCGAGGTTGAGGATATGTTATTTTCGCGACATTATATTCCAAAATGTATTTGGAAGCTACAAAAATGGCTAAATATTGGTCTAGAGAAGAAGGGCAAGGTAGCTCAAGAAAATCTTCACCAATTCTTGTCGAAATATATAGCTTACTACAAAGGCGATGACCAGAAAAGAAGAAGGAGGAGTAGTGAAGATGCGGATGAATCCGATTCTTCCTTACTAAAAGAACTAATGAAGGAAGGATTAAGAAAGGGGAAAATGGTTGAGAGGTACATTAGAGACACTGCAGTCAATATCTTATTTGCAGGAAATGGTGCAGTTAATTCAGGTCTCAATTGGTTCTTTTGGCTTGTTTCAATTCATCCTATTGTAGAAGCTAAAATTATTCAAGAGATCAAAGAAACATGTTTAACACAAGAGGAGAATTTGATCACTAATTTAAGTGAGGAAAAGCTTTGTAAGCTAGTTTACCTTCATGGAGCTATATGTGAAGCCCTAAGGCTATATCCACCTCTACCATATGAACACAAGTGTGCAATTAAATCAGATATACTACCTAGTGGAGACCATGTTAAGCCAAATACAAAGTTAATATATTCTTTGTATGCAATGGGAAGGATGGAGCAAATATGGGGAGAAGATTGCTTGGAGTTTAAGCCAGAGAGATGGATATCTGATAGAGGGGAGATTATACATGTACCATCTTACAAGTTCATATCATTCAATGCAGGTCCTAGAAAGTGTATAGGGAAAGATATGAGCTTTGTTCAAATGAAAATGATTGCAGTAGCTATGTTATGGAAGTTTCAAATAAAGGTAGTGGAAGGTCACTTTGTTACTCCAAGGGTTGCTGTGGGTCTTAGCTTGAAACATGGTCTTAAAGTCAAAGTCAATAAAAGGAGCATTTGA 1287 0.3489 MNVHHITSKNFTNYGKGSDFHEIFEIFGVGIFNLDSNEWKQEREIYHSLLNRKNFKIFFQQNIQKKLENCLLPFLDHASKGVLIIDLQDILGRFTFDIAFTSIFGFDSNCLPYNFDELPEIPFVKAISEVEDMLFSRHYIPKCIWKLQKWLNIGLEKKGKVAQENLHQFLSKYIAYYKGDDQKRRRRSSEDADESDSSLLKELMKEGLRKGKMVERYIRDTAVNILFAGNGAVNSGLNWFFWLVSIHPIVEAKIIQEIKETCLTQEENLITNLSEEKLCKLVYLHGAICEALRLYPPLPYEHKCAIKSDILPSGDHVKPNTKLIYSLYAMGRMEQIWGEDCLEFKPERWISDRGEIIHVPSYKFISFNAGPRKCIGKDMSFVQMKMIAVAMLWKFQIKVVEGHFVTPRVAVGLSLKHGLKVKVNKRSI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01411 428 PRINTS E-class P450 group IV signature 374 392 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PRINTS E-class P450 group IV signature 281 297 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PRINTS E-class P450 group IV signature 358 374 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PRINTS E-class P450 group IV signature 332 350 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PANTHER CYTOCHROME P450 2 420 - -
Trre1g01411 428 SUPERFAMILY Cytochrome P450 3 426 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 CDD CYP86A 2 419 - -
Trre1g01411 428 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 367 376 IPR017972 GO:0005506|GO:0016705
Trre1g01411 428 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PRINTS P450 superfamily signature 365 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PRINTS P450 superfamily signature 228 245 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 PRINTS P450 superfamily signature 286 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 Gene3D Cytochrome P450 1 427 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01411 428 Pfam Cytochrome P450 9 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01411 Trre-Chr1 10652506 10653792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01411 2 428 Cytochrome P450 AT4G39490 44.647 5.96e-133 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01411 - - cam:101494575 575.859