Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01405 ATGTCATTTCATCCCCCAGAATTTTTTAAGATAATGCATAACTTTGAAGAGGAGCTTAGGCTTCCAAAGAAATTTGTGGAGAAATATTGGAAAGGAATATCAAATCCAGTTGTCCTTAGCCTCCCAAATGGTGCTCAACAAAAAATATTTTGGGTGAAGTGTGATGGTAATATTTGGTTTCAAAAAAATTGGGAAAAAATTGCAAAGTTTCTAAAAGTTGGATATGCTGTAGTTTTTAAATATAAAGGAGGATCATATTTTAAGGTTAAGATATTTGGTGTCAATACATTGGAAATTGACTATTCCAATATAAAATTCATAGAAGATGAAATTTTTGAAGGTAAAGAAGTTGTTGAAGTGAGTGATGATAGTGATAAGAGTGAAATATCCAAGAACAAGAAATGGTATGAGAAAAATTACAATGGGGTTGAAACTACAAAAGAAGATAAAGAATTTGTTGAAGTGAGTGATGAAAGTGACACACCCACACAAACTCAAAGGACAAAAATTGGCAAGAGAAAAATGAATGTAGATGATGCTACCCAGCAAAAATTCTTATGTACTAACAAAGGAGACATGGTTAAGAAGGCCAAAGAAAGCCCATTAACGGAAACTGTTAATGAGAGAGCCAACAATGAGAATCCATGGTTTCAACTTAAATTGTCACCATGTTATGCCCATGGTACTTTCATGAAAATACCAAGTGAGTTTTCAAGAGAATACTTGAACAAGTTTAAAGGGATTGCAACCATAAGTGTTGGTGGGGACATGGCTATGAAAGTGAAGATGAAGTTTGATAATATTTATAGAAGATCCATTATAACTACTGGTTGGAATTTATTTAACCAAAGATATAACTTACAAGCTAATGATATATGTTACTTTGAGATGATTCAACTCCAACCACCTTCATTCTCTGTTTCTATTTTTCGAGCAATAGAGGACTCTAGCCCTAAGAAGTTGAAAGATTCAGAAGGTGATAATGTGGTGAAACCTAAGACATTTAAGCTTCTTGTGAATGCCTCATACCCGAACATACCAAATGAATTTTTTAATAGACATATTGAATGTCATGGAAAATTTGTGGAGATTAAAGTGGACAAAAAGTCATGGTTTGTAAAAGTGAACTATTATCCCAGAGGTAGTAGATTCTGTTCAGGTTGGAGAAAATTTATGGAAGATTGCAAATTGGAGATTGGAGACACTTGTGTCTTTGAGTTGATTGATGAGAAAAAATTTGTGTTTGTAGTTTCATTTGTAAGGAAGAAAAAATGTGGTATTTGA 1284 0.3302 MSFHPPEFFKIMHNFEEELRLPKKFVEKYWKGISNPVVLSLPNGAQQKIFWVKCDGNIWFQKNWEKIAKFLKVGYAVVFKYKGGSYFKVKIFGVNTLEIDYSNIKFIEDEIFEGKEVVEVSDDSDKSEISKNKKWYEKNYNGVETTKEDKEFVEVSDESDTPTQTQRTKIGKRKMNVDDATQQKFLCTNKGDMVKKAKESPLTETVNERANNENPWFQLKLSPCYAHGTFMKIPSEFSREYLNKFKGIATISVGGDMAMKVKMKFDNIYRRSIITTGWNLFNQRYNLQANDICYFEMIQLQPPSFSVSIFRAIEDSSPKKLKDSEGDNVVKPKTFKLLVNASYPNIPNEFFNRHIECHGKFVEIKVDKKSWFVKVNYYPRGSRFCSGWRKFMEDCKLEIGDTCVFELIDEKKFVFVVSFVRKKKCGI 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01405 427 Gene3D - 194 315 IPR015300 -
Trre1g01405 427 Gene3D - 321 424 IPR015300 -
Trre1g01405 427 ProSiteProfiles B3 DNA-binding domain profile. 329 423 IPR003340 GO:0003677
Trre1g01405 427 SMART B3_2 334 423 IPR003340 GO:0003677
Trre1g01405 427 SMART B3_2 217 313 IPR003340 GO:0003677
Trre1g01405 427 SMART B3_2 8 95 IPR003340 GO:0003677
Trre1g01405 427 Gene3D - 2 96 IPR015300 -
Trre1g01405 427 SUPERFAMILY DNA-binding pseudobarrel domain 211 311 IPR015300 -
Trre1g01405 427 PANTHER B3 DOMAIN-CONTAINING 329 426 - -
Trre1g01405 427 CDD B3_DNA 6 92 IPR003340 GO:0003677
Trre1g01405 427 MobiDBLite consensus disorder prediction 154 174 - -
Trre1g01405 427 CDD B3_DNA 217 311 IPR003340 GO:0003677
Trre1g01405 427 CDD B3_DNA 346 421 IPR003340 GO:0003677
Trre1g01405 427 ProSiteProfiles B3 DNA-binding domain profile. 216 313 IPR003340 GO:0003677
Trre1g01405 427 Pfam B3 DNA binding domain 346 422 IPR003340 GO:0003677
Trre1g01405 427 Pfam B3 DNA binding domain 225 312 IPR003340 GO:0003677
Trre1g01405 427 SUPERFAMILY DNA-binding pseudobarrel domain 339 425 IPR015300 -
Trre1g01405 427 SUPERFAMILY DNA-binding pseudobarrel domain 4 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01405 Trre-Chr1 10571124 10576971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01405 346 421 B3 DNA Binding Superfamily AT3G18990 30.263 2.53e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01405 B3 6.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01405 - - psat:127094583 439.884