Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01404 ATGGATTTGGATACTACCCAACAAAAATTCTCAGGTAGTAACAAAGTAGTCATGGTAAAGAAGGCTAAAAATTACCCAACAATTGTAGCTAGTGATGAGAGAGCCAACAATGAGTATCCCTTTTTTGAAGTTAAATTGACACCGTCTTATGTCAATGGTAGTTTTTTGGGGATACCAACTAAGTTTTCAAGAGAATACTTACATAAATTTGAAGGAACTGCAACCATAAGGGTTGGTGATGATGAAAAGACTATGGAAGTGAATGTGAGGTTTGAAGATGGCAATAAAAGGTCTACTTTGACCAAAGGTTGGAAGATACTTAGTAAAAAGTATAACTTGCAAGTTGACGATGTTTGTAAGTTTGTGATGACTCAACATCGACCACTTTTATTCACTATTAATATTAGTCGAGCTAGAAAAGGACCAGGCCCTAAGAAGTTGCTAGATTCAAAAGGTTGTAATACAATGAAACATAACACATTCAAGATTTTGGTGAAAAATAAAAATCCGAATGTGCCAAAGGAGTTTATGAACATAGGATGTCATGACAATAATGTGGAGTTGAAAATGAGGGGACAATCGTGGTTAGTAAAAGTAAACTATTGTCCTAGTATTAAAGGCAGTAGATTCAGTGCAGGCTGGAGACAATTTGCACAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTGAGTTAATTGATAAGAAAAAATTTGTGTTTAATGTTTCAATTGTAGGGAAAAACCATTGA 753 0.3479 MDLDTTQQKFSGSNKVVMVKKAKNYPTIVASDERANNEYPFFEVKLTPSYVNGSFLGIPTKFSREYLHKFEGTATIRVGDDEKTMEVNVRFEDGNKRSTLTKGWKILSKKYNLQVDDVCKFVMTQHRPLLFTINISRARKGPGPKKLLDSKGCNTMKHNTFKILVKNKNPNVPKEFMNIGCHDNNVELKMRGQSWLVKVNYCPSIKGSRFSAGWRQFAQECNVEIGDTCLFELIDKKKFVFNVSIVGKNH 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01404 250 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 162 248 IPR044837 -
Trre1g01404 250 SUPERFAMILY DNA-binding pseudobarrel domain 37 137 IPR015300 -
Trre1g01404 250 CDD B3_DNA 172 245 IPR003340 GO:0003677
Trre1g01404 250 Gene3D - 149 249 IPR015300 -
Trre1g01404 250 Gene3D - 20 140 IPR015300 -
Trre1g01404 250 SUPERFAMILY DNA-binding pseudobarrel domain 170 248 IPR015300 -
Trre1g01404 250 ProSiteProfiles B3 DNA-binding domain profile. 155 249 IPR003340 GO:0003677
Trre1g01404 250 CDD B3_DNA 40 137 IPR003340 GO:0003677
Trre1g01404 250 ProSiteProfiles B3 DNA-binding domain profile. 41 139 IPR003340 GO:0003677
Trre1g01404 250 Pfam B3 DNA binding domain 171 247 IPR003340 GO:0003677
Trre1g01404 250 Pfam B3 DNA binding domain 42 135 IPR003340 GO:0003677
Trre1g01404 250 SMART B3_2 160 249 IPR003340 GO:0003677
Trre1g01404 250 SMART B3_2 42 139 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01404 Trre-Chr1 10567593 10569508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01404 186 244 REM Transcription Factor Family AT1G49480 33.898 8.70e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01404 B3 1.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01404 - - mtr:120579732 291.582