Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01403 ATGGATTTGGATACTACCCAACAAAAATTCTCAGGTAGTAACAAAGTAGTCATGGTAAAGAAGGCTAAAAATTACCCAACAATTGTAGCTAGTGATGAGAGAGCCAACAATGAGTATCCCTTTTTTGAAGTTAAATTGACACCGTCTTATGTCAATGGTAGTTTTTTGGGGATACCAACTAAGTTTTCAAGAGAATACTTACATAAATTTGAAGGAACTGCAACCATAAGGGTTGGTGATGATGAAAAGACTATGGAAGTGAATGTGAGGTTTGAAGATGGCAATAAAAGGTCTACTTTGACCAAAGGTTGGAAGATACTTAGTAAAAAGTATAACTTGCAAGTTGACGATGTTTGTAAGTTTGTGATGACTCAACATCGACCACTTTTATTCACTATTAATATTAGTCGAGCTAGAAAAGGACCAGGCCCTAAGAAGTTGCTAGGTTATAAAGAAGGGATCACTTGCGATAATAATATTGCAAAGGGGAAAGAAATTGGAGGAATTTCTAGGAGTCTTCATAAAGTATACTTTTTTGACGATTCAAAAGGTTGTAATACAATGAAACATAACACATTCAAGATTTTGGTGAAAAATAAAAATCCGAATGTGCCAAAGGAGTTTATGAACATAGGATGTCATGACAATAATGTGGAGTTGAAAATGAGGGGACAATCGTGGTTAGTAAAAGTAAACTATTGTCCTAGTATTAAAGGCAGTAGATTCAGTGCAGGCTGGAGACAATTTGCACAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTGAGTTAATTGATAAGAAAAAATTTGTGTTTAATGTTTCAATTGTAGGGAAAAACCATTGA 849 0.3463 MDLDTTQQKFSGSNKVVMVKKAKNYPTIVASDERANNEYPFFEVKLTPSYVNGSFLGIPTKFSREYLHKFEGTATIRVGDDEKTMEVNVRFEDGNKRSTLTKGWKILSKKYNLQVDDVCKFVMTQHRPLLFTINISRARKGPGPKKLLGYKEGITCDNNIAKGKEIGGISRSLHKVYFFDDSKGCNTMKHNTFKILVKNKNPNVPKEFMNIGCHDNNVELKMRGQSWLVKVNYCPSIKGSRFSAGWRQFAQECNVEIGDTCLFELIDKKKFVFNVSIVGKNH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01403 282 Gene3D - 21 140 IPR015300 -
Trre1g01403 282 Gene3D - 180 281 IPR015300 -
Trre1g01403 282 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 54 275 IPR039218 -
Trre1g01403 282 CDD B3_DNA 204 277 IPR003340 GO:0003677
Trre1g01403 282 SUPERFAMILY DNA-binding pseudobarrel domain 37 137 IPR015300 -
Trre1g01403 282 SUPERFAMILY DNA-binding pseudobarrel domain 202 280 IPR015300 -
Trre1g01403 282 Pfam B3 DNA binding domain 42 135 IPR003340 GO:0003677
Trre1g01403 282 Pfam B3 DNA binding domain 203 278 IPR003340 GO:0003677
Trre1g01403 282 ProSiteProfiles B3 DNA-binding domain profile. 187 281 IPR003340 GO:0003677
Trre1g01403 282 SMART B3_2 192 281 IPR003340 GO:0003677
Trre1g01403 282 SMART B3_2 42 139 IPR003340 GO:0003677
Trre1g01403 282 CDD B3_DNA 40 137 IPR003340 GO:0003677
Trre1g01403 282 ProSiteProfiles B3 DNA-binding domain profile. 41 139 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01403 Trre-Chr1 10567593 10569508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01403 40 137 REM Transcription Factor Family AT1G49480 28.283 7.23e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01403 B3 1.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01403 - - mtr:112418291 306.219