Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01402 ATGTCATTTCAATATCGTCCCGATTTTAGAATAATATTGCAAGATTCTAAGAAGCTTATGCTTCCCAAAACATATGTGAAGAAATATTGGAAAGGAATATCAAACCCAATATTCCTTAAATTCCCAAATAGAGTTGAACAAGAAATATTTTGGGTAGAACGTGATGGTGAAATTTGGTTTCAAAAAAATTGGGAAAATTTTGCAAAGTTTTTGAAATATGGATATCTTTTAACATTTAAATACATAGGCAGATCATATTTCAAGGTTAAGATATTTGGTGTGAATGCTTTAGAGATAAACTATTCCAAAATTATAAAATGTGTTAATGAAGAAGTTGTTGAAGATGTTGATAAAGATAAAGAAATTGTTGAAGTGAGTGATGAGAGTGAAGAAGAGAGTGATGATGAGGATGAAATTATAGCTAACAGAACATGA 435 0.292 MSFQYRPDFRIILQDSKKLMLPKTYVKKYWKGISNPIFLKFPNRVEQEIFWVERDGEIWFQKNWENFAKFLKYGYLLTFKYIGRSYFKVKIFGVNALEINYSKIIKCVNEEVVEDVDKDKEIVEVSDESEEESDDEDEIIANRT 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01402 144 CDD B3_DNA 16 92 IPR003340 GO:0003677
Trre1g01402 144 Gene3D - 4 96 IPR015300 -
Trre1g01402 144 MobiDBLite consensus disorder prediction 124 144 - -
Trre1g01402 144 PANTHER B3 DOMAIN-CONTAINING 8 131 - -
Trre1g01402 144 SUPERFAMILY DNA-binding pseudobarrel domain 10 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01402 Trre-Chr1 10562187 10562754 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01402 6 101 B3 DNA Binding Superfamily AT3G18990 34.314 1.93e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01402 - - mtr:112418291 172.17