Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01401 ATGACAAATTGTTATGCCAATGGCCCTGTCATGAATGTACCAAGTGCGTTCTCTAGAGAACACTTGAACAATTTTGTAGGCACTGCATTCCTACAAGTTGGTAAGAACATGCCTATGAAAGTGAACATGAAGTTTGATGGCAACAATAGAAGATCGACTATAAGTCGTGGTTGGATGGAATTTAGGGAAAGATATAACTTGCAAGTTGATGATTCTTGTAAGTTTGTGATAATTCAACGCCAACCACTTGTATTCACTGTTGTTATTGAGCGAGCTGCAAAGGGACCAAACCCTAAGAAGTTGCATGGTTGGAGGCAAGTTTGA 324 0.3981 MTNCYANGPVMNVPSAFSREHLNNFVGTAFLQVGKNMPMKVNMKFDGNNRRSTISRGWMEFRERYNLQVDDSCKFVIIQRQPLVFTVVIERAAKGPNPKKLHGWRQV 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01401 107 SUPERFAMILY DNA-binding pseudobarrel domain 3 89 IPR015300 -
Trre1g01401 107 Pfam B3 DNA binding domain 11 90 IPR003340 GO:0003677
Trre1g01401 107 CDD B3_DNA 11 91 IPR003340 GO:0003677
Trre1g01401 107 ProSiteProfiles B3 DNA-binding domain profile. 1 93 IPR003340 GO:0003677
Trre1g01401 107 Gene3D - 1 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01401 Trre-Chr1 10561185 10561588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01401 8 91 REM Transcription Factor Family AT1G49480 30.588 6.20e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01401 B3 1.3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01401 - K16899 tpra:123913564 112.079