Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01397 ATGTCATTTCATCACAACCCTGAATTTCATAGGATAATTATGCAAGATAAGAAGCTTAGGGTTCCCAAGAAGTATGTGGAGAAATATTGGGAAGGGATATCAAACCCAATATTTCTAAGATTTCCAAATGGTGTTGAGCAAAAAATATTTTGGAAGAAGAGTAATGGTGATGTTTGCTTTCAAAAAAATTGGGAAAATTTTGCAAAGCCTCTCAAATATGGAAGTCTTTTAACTTTTAAACACATTGGTGGACCTTATTTCAAGGTGAAGATATTTGGTTTTAATGCTGTAGAGATAAACTATTTGAATATCAAAGCTGTAGAAGATAATGAAGAAGATGTTGAAGGTGCTGCTGCTAAAGAAGTTATTGATTTGAGTAAAGATGATTATGAAGATGAGTTTGAAGGTGAAGATGAGTTTGATGATGAGACTGATGATGAGTTTGAAGAGCAACCTCAAAGGATAACAAGCAAGAGAAAAATTCATGTGGATTTGGAATCATTTAGTAACAGAGGAGGCATGGCCAAAAAGGTAAAAAAATGTTCAACAAGTGAAGCTTTTAATGCAAGAGACATTGATGAGAATCCATTTTTTGAAGTTAAAATGACAAATTATTATGCCAATGGCCATTTCATGATGGTACCAAGTGAGTTCTCTAGAGAACACTTGAACAATTTTGTAGGCACTGCATTCCTACAAGTTGGTAAGAACATTCCTATAAAAGTAAACATGAAGTTTGATTTCAACAATAGAAGATCGACTATAAGTCGTGGTTGGAAGGAATTTAGGGAAAGATATAACTTGCAAGTTGATGATTCTTGTAAGTTTGTGATAATTCAACGCCGACCACTTGTATTCACTGTTGTTATTGAGCGAGCCGCAAAGGGACCAAGCCCTAAGAAGTTGCATGGTTGGAGGCAAGTTGGAGGCAATTTGTGGAAGAAATAA 948 0.3492 MSFHHNPEFHRIIMQDKKLRVPKKYVEKYWEGISNPIFLRFPNGVEQKIFWKKSNGDVCFQKNWENFAKPLKYGSLLTFKHIGGPYFKVKIFGFNAVEINYLNIKAVEDNEEDVEGAAAKEVIDLSKDDYEDEFEGEDEFDDETDDEFEEQPQRITSKRKIHVDLESFSNRGGMAKKVKKCSTSEAFNARDIDENPFFEVKMTNYYANGHFMMVPSEFSREHLNNFVGTAFLQVGKNIPIKVNMKFDFNNRRSTISRGWKEFRERYNLQVDDSCKFVIIQRRPLVFTVVIERAAKGPSPKKLHGWRQVGGNLWKK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01397 315 MobiDBLite consensus disorder prediction 134 153 - -
Trre1g01397 315 SUPERFAMILY DNA-binding pseudobarrel domain 5 95 IPR015300 -
Trre1g01397 315 MobiDBLite consensus disorder prediction 134 149 - -
Trre1g01397 315 SMART B3_2 9 95 IPR003340 GO:0003677
Trre1g01397 315 SMART B3_2 197 292 IPR003340 GO:0003677
Trre1g01397 315 SUPERFAMILY DNA-binding pseudobarrel domain 194 292 IPR015300 -
Trre1g01397 315 Gene3D - 174 295 IPR015300 -
Trre1g01397 315 Gene3D - 1 96 IPR015300 -
Trre1g01397 315 Pfam B3 DNA binding domain 197 291 IPR003340 GO:0003677
Trre1g01397 315 ProSiteProfiles B3 DNA-binding domain profile. 197 294 IPR003340 GO:0003677
Trre1g01397 315 CDD B3_DNA 17 92 IPR003340 GO:0003677
Trre1g01397 315 CDD B3_DNA 196 292 IPR003340 GO:0003677
Trre1g01397 315 PANTHER B3 DOMAIN-CONTAINING 4 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01397 Trre-Chr1 10516399 10519525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01397 7 293 B3 DNA Binding Superfamily AT3G18990 26.331 4.46e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01397 B3 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01397 - - mtr:112418291 316.62