Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01396 ATGGTCAAAAAGGGTAAAAAATGTTCAACAAGTGAAAATCCCTTTTTTGAAGTTACATTGACAGCTTATTACGCCCATGGCCATTTCTTGTTGGTACCAAGAGAGTTCTCTAAAGAACACTTGAACAATTTTGAAGGCAGGGCAACCCTACAAGTTGGTAAGGACATGCCTCTGAAAGTGAACATAAAATTTGGTGACAACTATAAGATATGTCATATAAGAAGTGGTTGGAAGTTATTTAGGGAAAAATATAACTTGCAAGTTGGTGATTCTTGTAAGTTCGTGATGATTCAACGCCAACCACTTTTATTCGCTGTTTTTATTAATCGAGCCACAAAGGGGCCAAGTCCTAAGATGTTGCATGGTTGGAGGCAAGTTGGAGGGAATTTGTGGAAGAATGCAAAATAG 408 0.3799 MVKKGKKCSTSENPFFEVTLTAYYAHGHFLLVPREFSKEHLNNFEGRATLQVGKDMPLKVNIKFGDNYKICHIRSGWKLFREKYNLQVGDSCKFVMIQRQPLLFAVFINRATKGPSPKMLHGWRQVGGNLWKNAK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01396 135 Pfam B3 DNA binding domain 15 102 IPR003340 GO:0003677
Trre1g01396 135 SUPERFAMILY DNA-binding pseudobarrel domain 9 110 IPR015300 -
Trre1g01396 135 CDD B3_DNA 14 110 IPR003340 GO:0003677
Trre1g01396 135 ProSiteProfiles B3 DNA-binding domain profile. 15 112 IPR003340 GO:0003677
Trre1g01396 135 SMART B3_2 15 110 IPR003340 GO:0003677
Trre1g01396 135 Gene3D - 1 113 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01396 Trre-Chr1 10509962 10510457 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01396 B3 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01396 - - tpra:123913564 145.206