Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01395 ATGTCATTTACAAAACGCCCCGAATTTAGGATAGTAATATTGCAAGATCAGAAAACAGCTAGGATTCCAAAGCAATATGGGGATACATATTGGAAAGGAACACCAAACCCAATAATCCTTATACTCCCAAATGCTAAAAAAAAGGGTAAAGAAATTATTGAAGTGACTGATGAGAGTGAAGATGATATTGAAACACCAATGCAAGCTCAAAGGACAAGAAATGGCAAGAGAAAATTCCAAGGTTGGAACAAAGGAAGTAGGGTGAAGAAGGCTAAAAAGTACCCAACAAATGAAGCTGTTAATGATGAGCATCCCTATTTTGAAGTTGTAATGACAAAATCTTATGTCCATGGCAATTTCATGTGGATACCAACAAAGTTTTCAAGAGAACACTTGAACAATTTTAATGGCAGTTCAACCCTACGTAGGGTTGGTAAGGAATTCACTATGAAAGTGAATATAAGTTTTAATGACAAAAATAAAAAATCTATGATAGTTGGTGGTTGGAAGCCATTTAGAAAAAATTATAATTTGCAAGTTGATGATGATTGCAAGTTTGTGATGACTCAACGCCGACCACCTTCATTCGATGTTATTATTAATCGAGCTAGAAAAGGACCAAGCCCTACGAATTTGCGAGGGATCTCTTGTGATGATAATATTGCAAAGAGGAGAGACATTGGAGAAACTTCTAGGGGCTGTCCAAGAGTGCATTTTGTTGAGGATTCAGGTGGTAATATGATGAAACATTTCACATTCAAGATTTTGGTGAAAGTTGATATTTACCCTCAATTACCAAAGGAGTTTATGAATACAGGATGTGATGAAAATCAAGTGGAGTTGAAAATGGGGACAAAATCCCGGTTTGTTAAAGTGAAGTATTATGATAGTATTAAAATCATAAAATTCGGTGAAGGTTGGAGACCATTTATTAAAGAATGCAATTTGATCGGAAAATTTTGTGTCTTTGAGTTCTTTGAGTTAATTGATGAGAAAAAATTTGTGTTTAATGTTTCAGTTGAAAGAAACAACCATTGA 1038 0.3468 MSFTKRPEFRIVILQDQKTARIPKQYGDTYWKGTPNPIILILPNAKKKGKEIIEVTDESEDDIETPMQAQRTRNGKRKFQGWNKGSRVKKAKKYPTNEAVNDEHPYFEVVMTKSYVHGNFMWIPTKFSREHLNNFNGSSTLRRVGKEFTMKVNISFNDKNKKSMIVGGWKPFRKNYNLQVDDDCKFVMTQRRPPSFDVIINRARKGPSPTNLRGISCDDNIAKRRDIGETSRGCPRVHFVEDSGGNMMKHFTFKILVKVDIYPQLPKEFMNTGCDENQVELKMGTKSRFVKVKYYDSIKIIKFGEGWRPFIKECNLIGKFCVFEFFELIDEKKFVFNVSVERNNH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01395 345 SMART B3_2 107 204 IPR003340 GO:0003677
Trre1g01395 345 SMART B3_2 252 344 IPR003340 GO:0003677
Trre1g01395 345 Gene3D - 83 205 IPR015300 -
Trre1g01395 345 Gene3D - 244 344 IPR015300 -
Trre1g01395 345 SUPERFAMILY DNA-binding pseudobarrel domain 100 202 IPR015300 -
Trre1g01395 345 SUPERFAMILY DNA-binding pseudobarrel domain 250 336 IPR015300 -
Trre1g01395 345 CDD B3_DNA 105 202 IPR003340 GO:0003677
Trre1g01395 345 MobiDBLite consensus disorder prediction 57 77 - -
Trre1g01395 345 ProSiteProfiles B3 DNA-binding domain profile. 106 204 IPR003340 GO:0003677
Trre1g01395 345 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 86 208 IPR044837 -
Trre1g01395 345 Pfam B3 DNA binding domain 107 191 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01395 Trre-Chr1 10492987 10496020 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01395 B3 4.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01395 - - tpra:123913564 379.793