Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01394 ATGTCACTGTATATCCCTCGAAAGTTCTTCAGGATTATGCAAAATGAAGATCTTCAAAACGGAGAAATGAAGGTTCCAAAAACATTTGTGGATTTACATTGGAAAAGTGTATCAAATCCTGTAGTGTTTATTCTCCCAAATGGTGCTGCACAAAAAATATATTGGGGGAAGCGTAATGGTTATATTTGGTTTCAAAAGAATTGGGAAAAATTTGCAAAGTTTCTAAAATTTGGATTTAATGTGTATTTTGAATACATAGGAGGTTCATATTTTAAGATTGAGATATGTGGTGTCAATACATTAGAAATTGATTATTCCAATATCAAATTCATAGATGAAGATGTGAATGATGAGATTAATGGTGTTGAAACTAGAAAAGAAGTTGAAGAAGCTATTGAAGTGAGTGATGATGATAGTGATAAGAGTTTAGATGAACATGAAATACTTACACAAACTCGTAAGACCAAAAATGGCAAGAGAAAAATGAATATGGATTCTAATGCTTATCATCAAAATATATCTGGTAATAGAGGACACATGAATAAGAAGGCTAAAAAATGCTCAACAAGTAAAGGCAATATTAATGGAAGAGAAATAGAAGAAGTTGAATTGAGTGATGATATTGATAATAAGAGTTCAGATGATGAAAGTGACATACCCACACAAATTCAAAGGACAAAAAATGGCAAAAGAAAAGATAAACTAAAGTATTCTCCGCACATAAGTAGAAAGAGAACAACAAATTATCATTCTTGTGGTGAGAATCCTAGTTTTGAACTTCAATTGTCACCTTCTTACGCCCATGGTCGTTGTTTGAGGATACCAAATGCTTTTTCGAGAGAATACTTGAAGGGGTTCAAAGGGACTGTGAATATTAGATTTGGTAAGGACAAGGCTATGGAAGTGAATTTGATTATTGATGCCAATGGATCATCAATTATTACCGGGGGTTGGAAGCCATTTGCTGAAAAATATAACTTGAAATTTAAAGTTGATTATATATGTAAATTTGAGATGACTCAAAGCAATCCATTTTCATTCACTATTACTATTAATCCAGCCATGACCAAACCAAGTTATAAAGGAAGAAGCTCTTCTAGTGATAACAATATTGGGTTGAGAAAATGCAACACTAAAGGAACTTCTAGCAACCGTCGTGCTATCTCGGATTCAAAAGGCCGTAATGTGATAAAGCATGACACATTCGAGCTTAATGTCAATTCCACCTCATACCCGTATGTATCAAATACGTTTATGCATAGACACAAAGAATGTTGGGGAAAATTCTTGAAGTTGAAAGTGAATGAAAAGTCATGGTCCGTAAAAGTTAACTATTATCCTCGAGGTAGTAGATTATCTGCAGGTTGGCCAGAGTTTAAGCAAGAATGCAATTTGGAGATCGGAGACCGTTGTCGCTTTAAGTTGATTGATGAGAAAAAATTTGTGTTCGAAGTTTCATTTGAAAGAAAGAAGTAA 1476 0.336 MSLYIPRKFFRIMQNEDLQNGEMKVPKTFVDLHWKSVSNPVVFILPNGAAQKIYWGKRNGYIWFQKNWEKFAKFLKFGFNVYFEYIGGSYFKIEICGVNTLEIDYSNIKFIDEDVNDEINGVETRKEVEEAIEVSDDDSDKSLDEHEILTQTRKTKNGKRKMNMDSNAYHQNISGNRGHMNKKAKKCSTSKGNINGREIEEVELSDDIDNKSSDDESDIPTQIQRTKNGKRKDKLKYSPHISRKRTTNYHSCGENPSFELQLSPSYAHGRCLRIPNAFSREYLKGFKGTVNIRFGKDKAMEVNLIIDANGSSIITGGWKPFAEKYNLKFKVDYICKFEMTQSNPFSFTITINPAMTKPSYKGRSSSSDNNIGLRKCNTKGTSSNRRAISDSKGRNVIKHDTFELNVNSTSYPYVSNTFMHRHKECWGKFLKLKVNEKSWSVKVNYYPRGSRLSAGWPEFKQECNLEIGDRCRFKLIDEKKFVFEVSFERKK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01394 491 MobiDBLite consensus disorder prediction 131 254 - -
Trre1g01394 491 PANTHER B3 DOMAIN-CONTAINING 7 210 - -
Trre1g01394 491 ProSiteProfiles B3 DNA-binding domain profile. 437 491 IPR003340 GO:0003677
Trre1g01394 491 SUPERFAMILY DNA-binding pseudobarrel domain 410 483 IPR015300 -
Trre1g01394 491 MobiDBLite consensus disorder prediction 214 228 - -
Trre1g01394 491 MobiDBLite consensus disorder prediction 139 163 - -
Trre1g01394 491 SUPERFAMILY DNA-binding pseudobarrel domain 7 97 IPR015300 -
Trre1g01394 491 Gene3D - 6 100 IPR015300 -
Trre1g01394 491 MobiDBLite consensus disorder prediction 229 243 - -
Trre1g01394 491 Gene3D - 240 355 IPR015300 -
Trre1g01394 491 Gene3D - 383 491 IPR015300 -
Trre1g01394 491 Pfam B3 DNA binding domain 258 351 IPR003340 GO:0003677
Trre1g01394 491 Pfam B3 DNA binding domain 413 489 IPR003340 GO:0003677
Trre1g01394 491 ProSitePatterns EF-hand calcium-binding domain. 136 148 IPR018247 -
Trre1g01394 491 SMART B3_2 9 99 IPR003340 GO:0003677
Trre1g01394 491 SMART B3_2 402 491 IPR003340 GO:0003677
Trre1g01394 491 SMART B3_2 258 355 IPR003340 GO:0003677
Trre1g01394 491 MobiDBLite consensus disorder prediction 164 178 - -
Trre1g01394 491 CDD B3_DNA 405 489 IPR003340 GO:0003677
Trre1g01394 491 CDD B3_DNA 256 351 IPR003340 GO:0003677
Trre1g01394 491 SUPERFAMILY DNA-binding pseudobarrel domain 254 348 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01394 Trre-Chr1 10486553 10489643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01394 413 486 B3 DNA Binding Superfamily AT3G18990 33.784 8.99e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01394 B3 6.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01394 - - cam:101508042 359.762