Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01393 ATGTCTTCTCAAGAACTTCATCATGGGAGCAATAGTGTCCACTTTTTCAAGATTATTCTTCAAACTACCCTTCAAAAAGGAAAATTGAGAGTGCCTATAAAAATAAAATACCCTTTAAGAGAAACTAGTGAAGAGTATGAAGATGTTGAAGAGAGTGATTGTTCTTTGAAAATTATTGAGGATCCTTCATCATCGCGGGGTAAAAGGACAAAATCTCCAATGCCATCTTCCAAACTTTCTAAGAAGATGAAAATCAATCCAAAAGAATCTAAGCATGAGAAGAGAATCGTCCAAACACATGCAGGAAGTAGCTGTGACAATCTTAAGAAGAGAAGCAATGATTTGTTTGAAAAAGTGATGACAAATTTTGATTCGGATAAGAACTTCTTCGCATGTATTCTCCAAAAGTCATACATTGAGAGAGATGTCTTGGTCATACCAATTGAATTTGCTAAGACACATCTACAAAGGATGGAAGGAAGAAATGTTACCCTTTTTGTTGACAAAGATAGAACATGGAATGTTGATTTGAAGCTCGCTTCAAATAAACAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGTACTCACTATAATTTGAAATTTGGTGATGTTTGTGTTTTTGTGTTAAACAAATGCAAAGGATCGGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAGGACATGAACACTCCATATTTTCAAGGGTATTGTGAAGGAATGTGA 729 0.3443 MSSQELHHGSNSVHFFKIILQTTLQKGKLRVPIKIKYPLRETSEEYEDVEESDCSLKIIEDPSSSRGKRTKSPMPSSKLSKKMKINPKESKHEKRIVQTHAGSSCDNLKKRSNDLFEKVMTNFDSDKNFFACILQKSYIERDVLVIPIEFAKTHLQRMEGRNVTLFVDKDRTWNVDLKLASNKQFTLSGGWSKFRTHYNLKFGDVCVFVLNKCKGSVSFQVVIFSLEKDMNTPYFQGYCEGM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01393 242 ProSiteProfiles B3 DNA-binding domain profile. 129 227 IPR003340 GO:0003677
Trre1g01393 242 Pfam B3 DNA binding domain 129 221 IPR003340 GO:0003677
Trre1g01393 242 MobiDBLite consensus disorder prediction 60 93 - -
Trre1g01393 242 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 229 IPR044837 -
Trre1g01393 242 SUPERFAMILY DNA-binding pseudobarrel domain 123 225 IPR015300 -
Trre1g01393 242 Gene3D - 108 228 IPR015300 -
Trre1g01393 242 CDD B3_DNA 115 225 IPR003340 GO:0003677
Trre1g01393 242 SMART B3_2 129 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01393 Trre-Chr1 10471357 10473145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01393 123 210 REM Transcription Factor Family AT4G31640 28.409 1.28e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01393 B3 4.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01393 - - tpra:123894507 251.906