Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01392 ATGTCTTCTCAAGAACTTCATCATGGGAGCAATAGTGTCCACTTTTTCAAGATTATTCTTCAAACTACCCTTCAAAAAGGAAAATTGAGAGTGCCTATAAAAATAAAATACCCTTTAAGAGAAACTAGTGAAGAGTATGAAGATGTTGAAGAGAGTGATTGTTCTTTGAAAATTATTGAGGATCCTTCATCATCGCGGGGTAAAAGGACAAAATCTCCAATGCCATCTTCCAAACTTTCTAAGAAGATGAAAATCAATCCAAAAGAATCTAAGCATGAGAAGAGAATCGTCCAAACACATGGAAGTAGCTGTGACAATCTTAAGAAGAGAAGCAATGATTTGTTTGAAAAAGTGATGACAAATTTTGATTCGGATAAGAACTTCTTCGCATGTATTCTCCAAAAGTCATACATTGAGAGAGATGTCTTGGTCATACCAATTGAATTTGCTAAGACACATCTACAAAGGATGGAAGGAAGAAATGTTACCCTTTTTGTTGACAAAGATAGAACATGGAATGTTGATTTGAAGCTCGCTTCAAATAAACAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGTACTCACTATAATTTGAAATTTGGTGATGTTTGTGTTTTTGTGTTAAACAAATGCAAAGGATCGGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAGGACATGAACACTCCATATTTTCAAGGGTATTGTGAAGGAATGTGA 726 0.343 MSSQELHHGSNSVHFFKIILQTTLQKGKLRVPIKIKYPLRETSEEYEDVEESDCSLKIIEDPSSSRGKRTKSPMPSSKLSKKMKINPKESKHEKRIVQTHGSSCDNLKKRSNDLFEKVMTNFDSDKNFFACILQKSYIERDVLVIPIEFAKTHLQRMEGRNVTLFVDKDRTWNVDLKLASNKQFTLSGGWSKFRTHYNLKFGDVCVFVLNKCKGSVSFQVVIFSLEKDMNTPYFQGYCEGM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01392 241 Pfam B3 DNA binding domain 128 220 IPR003340 GO:0003677
Trre1g01392 241 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 55 228 IPR044837 -
Trre1g01392 241 CDD B3_DNA 114 224 IPR003340 GO:0003677
Trre1g01392 241 MobiDBLite consensus disorder prediction 60 93 - -
Trre1g01392 241 SMART B3_2 128 226 IPR003340 GO:0003677
Trre1g01392 241 ProSiteProfiles B3 DNA-binding domain profile. 128 226 IPR003340 GO:0003677
Trre1g01392 241 Gene3D - 106 227 IPR015300 -
Trre1g01392 241 SUPERFAMILY DNA-binding pseudobarrel domain 122 224 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01392 Trre-Chr1 10471357 10473145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01392 122 209 REM Transcription Factor Family AT4G31640 28.409 1.27e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01392 B3 4.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01392 - - tpra:123894507 249.98