Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01390 ATGGCATTGTATTGTGGTCCTCCAAAGTTCTTCAAGGTTATCCAAGACCATGAACTTCAAAATGGAGAGCTTAGGGTACCAAAGAAGTTTGTTGAGAAATATTGGAATGGAATACCAAATCCAGTAGTTGTAACACTCCCTAATGGTATTCAACAAGAATTGTTTTGGGTGAAGCGTGACGAAGGGGTTGTATTGTTTCGAAAGAATTGGAAGAAAATAGTGAAATTTTTGAAATTTGGATATCTTGTTGTTTTCAAGTATGTTGGAGGTTCTTGTTTTCAGCTCGATATATTTGGCCGTAATTGTGTGGAAATTGACTATTCCAAGTTCATAGATCAAGTTAAGAAAGAAGCTGAATTTGTTGAAGTTGTAGATGATGAAGCTGAATTTGCTGGTACATCTCGAAGAACAAAAAGAGGTACTAAGAAAGGTACTAAGAGTACCAATCCAAGTTTTGACCTTACACTGACTCAAACTTATGCACAAGGATATTTATTTAGGATTCCAACTGAATTTTCTAGAAGGTATTTGAAAGATTTTGAAGGGATTGCAAGGATAAGAAATGTTGGTGATGATTCGACTTGGGAGGTGGAGGTGAAATATGAGCGTCTAAAAGGTAATGATTATTCTGTTGTGAAAAGTGGTTGGAAACCATTTGCCATGGAATATAATTTGAAAATTGGCGATGTTTGTAACTTTGAGATGACTCGATCCGAACCTCTTTCTTTTACCGTCACTATTATCCGAGCTTGA 753 0.3612 MALYCGPPKFFKVIQDHELQNGELRVPKKFVEKYWNGIPNPVVVTLPNGIQQELFWVKRDEGVVLFRKNWKKIVKFLKFGYLVVFKYVGGSCFQLDIFGRNCVEIDYSKFIDQVKKEAEFVEVVDDEAEFAGTSRRTKRGTKKGTKSTNPSFDLTLTQTYAQGYLFRIPTEFSRRYLKDFEGIARIRNVGDDSTWEVEVKYERLKGNDYSVVKSGWKPFAMEYNLKIGDVCNFEMTRSEPLSFTVTIIRA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01390 250 Pfam B3 DNA binding domain 165 249 IPR003340 GO:0003677
Trre1g01390 250 SMART B3_2 152 247 IPR003340 GO:0003677
Trre1g01390 250 SMART B3_2 10 101 IPR003340 GO:0003677
Trre1g01390 250 Gene3D - 133 250 IPR015300 -
Trre1g01390 250 ProSiteProfiles B3 DNA-binding domain profile. 151 250 IPR003340 GO:0003677
Trre1g01390 250 CDD B3_DNA 150 249 IPR003340 GO:0003677
Trre1g01390 250 CDD B3_DNA 8 98 IPR003340 GO:0003677
Trre1g01390 250 SUPERFAMILY DNA-binding pseudobarrel domain 146 249 IPR015300 -
Trre1g01390 250 PANTHER B3 DOMAIN-CONTAINING 7 129 - -
Trre1g01390 250 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Trre1g01390 250 Gene3D - 6 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01390 Trre-Chr1 10461327 10462472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01390 148 249 B3 DNA Binding Superfamily AT3G18990 30.097 8.69e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01390 B3 5.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01390 - - tpra:123901651 284.648